CIR0307, CIR0307 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0307
AliasCIR307
Genbank IDAJ567250
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567250
Source Typegenomic
Repeat Motif(AC)18
PCR ConditionAnnealing temperature: 46
Primer 1CIR307_F: GACTTGAAAAGATTACACAC
Primer 2CIR307_R: GAATTTGCTGGCTCT
Product Length182
PolymorphismP_ CIR0307
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567250
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567250AJ567250Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch15_Dt.01N/A0CIR307View
2TM-1 x 3-79, RIL (2012)AD_ch15_Dt.01N/A75.21CIR307View
3Emian-22 x 3-79, BC1 (2011)AD_ch15_Dt.01N/A121.11CIR307View
4DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A72.4CIR307View
5DH962 x Jinmian-6, F2 (2009)AD_ch15_Dt.01N/A72.4CIR307View
6Yumian-1 x 7235, RIL (2015)AD_ch15_Dt.01N/A88.9CIR307View
7DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A32.91CIR307View
8DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A32.91CIR307View
9TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A44.7CIR307View
10GX1135 x GX100-2, F2 (2013)AD_ch01_At.01N/A92.4CIR307View
11GX1135 x GX100-2, RIL (2015)AD_ch15_Dt.01N/A4.7CIR307View
12GX1135 x GX100-2, RIL (2016)AD_ch15_Dt.01N/A4.7CIR307View
130-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A40.4CIR307View
14DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A0CIR307View
15901-001 x sGK156, F2 (2019)AD_ch15_Dt.01N/A158.14CIR307View
16HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch15_Dt.01N/A0CIR307-176View
17AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A52cir0307View
18TM-1 x Hai-7124, BC1 (2007)AD_ch15_Dt.01N/A73.4CIR307-160View
19TM-1 x Hai-7124, BC1 (2008)AD_ch15_Dt.01N/A72.07CIR307-160View
20TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A53.5CIR307-160View
21TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A44.69CIR307View
22MGG-293-793, MAGIC (2018)AD_ch15_Dt.01N/A134CIR307View
Sequence
>CIR0307 ID=CIR0307; Name=CIR0307; organism=Gossypium hirsutum; type=genetic_marker; length=182bp
GACTTGAAAAGATTACACACACACACACACACACACACACACACACACAC
ATCCTATAGTCATACCTAAATGGGAAACGGTCCCAAAAAGAGAATCTAAA
TTCAAAGTGCAAAAGCGAAAAACTACTTCGTTTTTAAAAGAAGTTACTTT
AGTACATCTTAAATTGCAGAGCCAGCAAATTC