CIR0293, CIR0293 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0293
AliasCIR293
Genbank IDAJ567237
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567237
Source Typegenomic
Repeat Motif(CA)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR293_F: CCGCTTTATCACATCTCT
Primer 2CIR293_R: GGTTGTCTTTCAGTTTGG
Product Length303
PolymorphismP_ CIR0293
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567237
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567237AJ567237Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch12_At.12N/A73.1CIR293View
2Emian-22 x 3-79, BC1 (2011)AD_ch12_At.12N/A153CIR293View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch12_At.12N/A38.07CIR293View
4TM-1 x 3-79, RIL (2012)AD_ch12_At.12N/A96.71CIR293View
5TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A96.7CIR293View
6SG 747 x Giza 75, BIL (2013)AD_ch12_At.12N/A72.4CIR293View
7Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch12_At.12N/A41.6CIR293aView
8AD-genome wide Reference Map (2009)AD_ch12_At.12N/A56cir0293View
9TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A96.71CIR293View
10PD 94042 x (AD)4-08, F2 (2016)AD_ch12_At.12N/A180.9CIR293View
Sequence
>CIR0293 ID=CIR0293; Name=CIR0293; organism=Gossypium hirsutum; type=genetic_marker; length=303bp
CCGCTTTATCACATCTCTGATAAAAAAAATTGTAAGTCCCAGGCAACAAC
AATTTGTATTATACGATAACAAAGCAACGAGTCCACATTGAGAACCACAA
AAAAAAAAAAACACACACACACATTAGAATGCGCGGGTCTAACACGACAG
TTCCGATGAAAACAAGTCGTCAGCATAGCCAAATCCTCATTATTAGAGAG
ACACCTAGCAATTACACCATTATTACGAGAAACATTACCTTCAATAAACA
TATCCACATCATGTCGACACATTTTGTAACAAGCACCAAACTGAAAGACA
ACC