CIR0291, CIR0291 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0291
AliasCIR291
Genbank IDAJ567235
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567235
Source Typegenomic
Repeat Motif(CA)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR291_F: TTTGGTGACTCGGTTT
Primer 2CIR291_R: GCATTTCGGCTCTTAC
Product Length103
PolymorphismP_ CIR0291
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567235
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567235AJ567235Gossypium hirsutumsequence_feature


Image
File NameLegend
48_FISH_TAG-115-675.jpgTwenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675]
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A147CIR291cView
2SG 747 x Giza 75, BIL (2013)AD_ch10_At.10N/A32CIR291cView
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch08_At.08N/A181.3CIR291aView
4SG 747 x Giza 75, BIL (2013)AD_ch06_At.06N/A61.3CIR291aView
5Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch04_At.04N/A95.9CIR291bView
6SG 747 x Giza 75, BIL (2013)AD_ch08_At.08N/A44.1CIR291bView
7Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch06_At.06N/A143.6CIR291fView
8Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch09_At.09N/A31.6CIR291dView
9Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch10_At.10N/A59.1CIR291eView
10Guazuncho-2 x VH8-4602, consensus (2009)AD_ch12_At.12N/A103.16CIR291View
11Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A92.01CIR291View
12Guazuncho-2 x VH8-4602, consensus (2009)AD_ch04_At.04N/A48.36CIR291View
13Guazuncho-2 x VH8-4602, consensus (2009)AD_ch06_At.06N/A64.15CIR291View
14Guazuncho-2 x VH8-4602, consensus (2009)AD_ch08_At.08N/A125.19CIR291View
15Guazuncho-2 x VH8-4602, consensus (2009)AD_ch09_At.09N/A29.01CIR291View
16Guazuncho-2 x VH8-4602, RIL (2009)AD_ch08_At.08N/A49.39CIR291View
17Guazuncho-2 x VH8-4602, RIL (2009)AD_ch12_At.12N/A56.36CIR291View
18Guazuncho-2 x VH8-4602, RIL (2009)AD_ch04_At.04N/A34.04CIR291View
19Guazuncho-2 x VH8-4602, RIL (2009)AD_ch06_At.06N/A27.85CIR291View
20Guazuncho-2 x VH8-4602, consensus (2009)AD_ch10_At.10N/A57CIR291View
21Yumian-1 x T586, RIL (2006)AD_ch08_At.08N/A23CIR291View
22Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A41.9CIR291View
23Yumian-1 x 7235, RIL (2015)AD_ch08_At.08N/A60.3CIR291View
24TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch13_At.13N/A53.8CIR291View
25GX1135 x VGX100-2, RIL (2016)AD_ch06_At.06N/A68.9CIR291View
26AD-genome wide Reference Map (2009)AD_ch04_At.04N/A86cir0291View
27AD-genome wide Reference Map (2009)AD_ch06_At.06N/A61cir0291View
28AD-genome wide Reference Map (2009)AD_ch08_At.08N/A147cir0291View
29AD-genome wide Reference Map (2009)AD_ch09_At.09N/A58cir0291View
30AD-genome wide Reference Map (2009)AD_ch10_At.10N/A49cir0291View
31AD-genome wide Reference Map (2009)AD_ch13_At.13N/A188cir0291View
32TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A94.7CIR291-50View
33TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A58.91CIR291-50View
34TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A60.2CIR291-50View
35TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A44.4CIR291-620View
36TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A84.87CIR291-620View
37TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A49.1CIR291-620View
38TM-1 x Hai-7124, BC1 (2007)AD_ch10_At.10N/A42.5CIR291-80View
39TM-1 x Hai-7124, BC1 (2008)AD_ch10_At.10N/A54.74CIR291-80View
40TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A73.2CIR291-80View
41Yumian-1 x T586, RIL (2009)AD_ch08_At.08N/A18.2CIR291/400y(C6)View
42PD 94042 x (AD)4-08, F2 (2016)AD_ch13_At.13N/A87.5CIR291View
Sequence
>CIR0291 ID=CIR0291; Name=CIR0291; organism=Gossypium hirsutum; type=genetic_marker; length=103bp
TTTGGTGACTCGGTTTAGCGGTCCCGAAACCGCTTTCCGACTAGGGTCAC
TTTAGGGCTGTCACACACACACACTATATATGAATCGGTAAGAGCCGAAA
TGC