CIR0283, CIR0283 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0283
AliasCIR283
Genbank IDAJ567227
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567227
Source Typegenomic
Repeat Motif(TG)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR283_F: AATGTCTGATTAGTTGTTGG
Primer 2CIR283_R: CTTCTCTTTCTTTCCCTCT
Product Length276
PolymorphismP_ CIR0283
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567227
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:39419459..39419736 +
A09chromosomeA09:66427151..66427424 -
CM018223.1chromosomeCM018223.1:37145933..37146212 -
CM018210.1chromosomeCM018210.1:62155565..62155838 -
D5_09chromosomeD5_09:30993816..30994096 -
KI_09chromosomeKI_09:28888131..28888402 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:68849406..68849679 -
D10_09chromosomeD10_09:12428870..12429149 +
CM016622.1chromosomeCM016622.1:20219254..20219537 +
Dt_chr6chromosomeDt_chr6:12669058..12669335 +
At_chr6chromosomeAt_chr6:49518303..49518576 -
D09chromosomeD09:37216518..37216795 -
A09chromosomeA09:61600336..61600609 -
Ghir_D09chromosomeGhir_D09:39240040..39240317 -
Ghir_A09chromosomeGhir_A09:66281920..66282193 -
D09chromosomeD09:38977172..38977449 -
A09chromosomeA09:68115275..68115548 -
D09chromosomeD09:38997180..38997457 -
A09chromosomeA09:68035905..68036178 -
D09chromosomeD09:37076427..37076704 -
A09chromosomeA09:64930540..64930813 -
At09chromosomeAt09:64012467..64012740 -
scaffold3582supercontigscaffold3582:8587..8866 -
scaffold16190supercontigscaffold16190:12476..12749 -
Gbar_D09chromosomeGbar_D09:37838192..37838471 -
Gbar_A09chromosomeGbar_A09:62607370..62607643 -
D09chromosomeD09:40370097..40370376 -
A09chromosomeA09:64055596..64055869 -
CM017631.1chromosomeCM017631.1:38045207..38045486 -
CM017618.1chromosomeCM017618.1:63810213..63810486 -
CM017657.1chromosomeCM017657.1:39445188..39445465 -
CM017644.1chromosomeCM017644.1:66759816..66760089 -
CM017709.1chromosomeCM017709.1:38642260..38642539 -
CM017696.1chromosomeCM017696.1:63983959..63984232 -
D09chromosomeD09:40660608..40660885 -
A09chromosomeA09:69354637..69354910 -
Chr09chromosomeChr09:68072744..68073019 -
Chr09chromosomeChr09:71332949..71333222 -
Chr09chromosomeChr09:37223415..37223696 -
B_09chromosomeB_09:55510873..55511152 -
chr06chromosomechr06:30734477..30734756 -
Chr_06chromosomeChr_06:25911749..25912028 -
Chr06chromosomeChr06:39084038..39084321 -
Chr06chromosomeChr06:28401224..28401505 -
Chr06chromosomeChr06:21193957..21194233 -
Chr06chromosomeChr06:26216071..26216352 -
E09chromosomeE09:17467137..17467414 +
F09chromosomeF09:56717291..56717570 -
Chr09chromosomeChr09:112121338..112121614 -
Chr06chromosomeCIR0283:1..486 .
Chr06:38401781..38402272 -
Chr6chromosomeCIR0283:1..486 .
Chr6:29174840..29175331 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567227AJ567227Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch23_Dt.09N/A145.5CIR283View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch23_Dt.09N/A76.65CIR283View
3TM-1 x 3-79, RIL (2012)AD_ch23_Dt.09N/A74.66CIR283View
4TM-1 x 3-79, RIL (2014)AD_ch23_Dt.09N/A70.2CIR283View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch23_Dt.09N/A94.7CIR283View
6AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A118cir0283View
7TM-1 x 3-79, RIL (2012.v3)AD_ch23_Dt.09N/A70.16CIR283View
Sequence
>CIR0283 ID=CIR0283; Name=CIR0283; organism=Gossypium hirsutum; type=genetic_marker; length=276bp
AATGTCTGATTAGTTGTTGGAAAAGCGAAGAAATGTGGGGGAAAAAAATG
TTTTTACTACTTTATATTTATATTTATTACTGTGTAACATAGAAAAAACG
TTAAAAAAATTATTCTGTGTGTGTGTGTTTGTAGTTTCGCAGTATGTATG
ATTGTGTATTGCTTGAGAATGGAAGAAAAACATAAAGATATTTAATCCTG
GGTACTCTCTTGTTTCTTTCCTTTTTGTTTCAACGGGTGTTTCCTGAGTC
TGGAAAAAGAGGGAAAGAAAGAGAAG