CIR0278, CIR0278 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0278
AliasCIR278
Genbank IDAJ567222
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567222
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR278_F: TCCTCCAAGAACCCTC
Primer 2CIR278_R: GGCACCTTCATAACCTC
Product Length155
PolymorphismP_ CIR0278
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:6540578..6540733 +
A08chromosomeA08:6096754..6096910 +
CM018222.1chromosomeCM018222.1:5823838..5823991 +
CM018209.1chromosomeCM018209.1:6132565..6132719 +
D5_08chromosomeD5_08:5681414..5681568 +
KI_08chromosomeKI_08:4534790..4534938 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:6978174..6978328 +
D10_08chromosomeD10_08:56734762..56734919 -
At_chr1chromosomeAt_chr1:740274..740430 +
D08chromosomeD08:5882640..5882795 +
A08chromosomeA08:5785281..5785437 +
Ghir_D08chromosomeGhir_D08:5928549..5928704 +
Ghir_A08chromosomeGhir_A08:6212197..6212353 +
D08chromosomeD08:5670050..5670205 +
A08chromosomeA08:6152143..6152299 +
D08chromosomeD08:5375688..5375843 +
A08chromosomeA08:6575715..6575871 +
D08chromosomeD08:5993735..5993890 +
A08chromosomeA08:6157254..6157410 +
Dt08chromosomeDt08:5472328..5472481 +
scaffold9444supercontigscaffold9444:174120..174273 +
scaffold690supercontigscaffold690:188849..189003 -
Gbar_D08chromosomeGbar_D08:5951439..5951592 +
Gbar_A08chromosomeGbar_A08:6490491..6490645 +
D08chromosomeD08:6064175..6064328 +
A08chromosomeA08:6261139..6261293 +
CM017630.1chromosomeCM017630.1:6081818..6081971 +
CM017617.1chromosomeCM017617.1:6444970..6445124 +
CM017656.1chromosomeCM017656.1:6337063..6337218 +
CM017643.1chromosomeCM017643.1:6736723..6736879 +
CM017708.1chromosomeCM017708.1:5916375..5916530 +
CM017695.1chromosomeCM017695.1:6306227..6306381 +
D08chromosomeD08:6103713..6103868 +
A08chromosomeA08:6674765..6674921 +
Chr08chromosomeChr08:7198954..7199108 +
Chr08chromosomeChr08:7454408..7454562 +
Chr08chromosomeChr08:5683348..5683502 +
B_08chromosomeB_08:7589017..7589176 +
Chr04chromosomeChr04:5717219..5717375 +
chr04chromosomechr04:5137669..5137828 +
Chr_04chromosomeChr_04:4952160..4952312 +
Chr04chromosomeChr04:5833166..5833328 +
Chr04chromosomeChr04:5136145..5136299 +
Chr04chromosomeChr04:4063897..4064051 +
Chr04chromosomeChr04:4927427..4927581 +
E08chromosomeE08:8589418..8589572 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567222AJ567222Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch24_Dt.08N/A41.3CIR278View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch24_Dt.08N/A128.9CIR278View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch24_Dt.08N/A92.66CIR278View
4Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A79.36CIR278View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A74CIR278View
6AD-genome wide Reference Map (2009)AD_ch08_At.08N/A209cir0278View
7AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A42cir0278View
8TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A39.18CIR278bView
9TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A49.8CIR278bView
10TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A8.84CIR278aView
11TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A12.8CIR278aView
12TM-1 x Hai-7124, BC1 (2007)AD_ch08_At.08N/A39.4CIR278-160View
13TM-1 x Hai-7124, BC1 (2008)AD_ch08_At.08N/A89.75CIR278-160View
14TM-1 x Hai-7124, BC1 (2012)AD_ch08_At.08N/A46.4CIR278-160View
15CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A87.2CIR278View
16TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A49.77CIR278bView
17TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A12.78CIR278aView
Sequence
>CIR0278 ID=CIR0278; Name=CIR0278; organism=Gossypium hirsutum; type=genetic_marker; length=155bp
TCCTCCAAGAACCCTCTTAAGTACATGGAAAAACTAAAACACACACACAC
ACACAAACTGAGTATACCGGTGTACATTTACTGGATTCAGATACACACTT
ATGTGGTTTGTTTTCTCATCAATTCTTTTTCTCTGTCAGAGGTTATGAAG
GTGCC