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Marker Overview
Name | CIR0278 |
Alias | CIR278
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Genbank ID | AJ567222 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567222
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Source Type | genomic |
Repeat Motif | (AC)8 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR278_F: TCCTCCAAGAACCCTC |
Primer 2 | CIR278_R: GGCACCTTCATAACCTC |
Product Length | 155 |
Polymorphism | P_ CIR0278 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch24_Dt.08 | N/A | 41.3 | CIR278 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch24_Dt.08 | N/A | 128.9 | CIR278 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch24_Dt.08 | N/A | 92.66 | CIR278 | View |
4 | Emian-22 x 3-79, BC1 (2011) | AD_ch08_At.08 | N/A | 79.36 | CIR278 | View |
5 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch08_At.08 | N/A | 74 | CIR278 | View |
6 | AD-genome wide Reference Map (2009) | AD_ch08_At.08 | N/A | 209 | cir0278 | View |
7 | AD-genome wide Reference Map (2009) | AD_ch24_Dt.08 | N/A | 42 | cir0278 | View |
8 | TM-1 x 3-79, RIL (2012) | AD_ch08_At.08 | N/A | 39.18 | CIR278b | View |
9 | TM-1 x 3-79, RIL (2014) | AD_ch08_At.08 | N/A | 49.8 | CIR278b | View |
10 | TM-1 x 3-79, RIL (2012) | AD_ch24_Dt.08 | N/A | 8.84 | CIR278a | View |
11 | TM-1 x 3-79, RIL (2014) | AD_ch24_Dt.08 | N/A | 12.8 | CIR278a | View |
12 | TM-1 x Hai-7124, BC1 (2007) | AD_ch08_At.08 | N/A | 39.4 | CIR278-160 | View |
13 | TM-1 x Hai-7124, BC1 (2008) | AD_ch08_At.08 | N/A | 89.75 | CIR278-160 | View |
14 | TM-1 x Hai-7124, BC1 (2012) | AD_ch08_At.08 | N/A | 46.4 | CIR278-160 | View |
15 | CCRI 12-4 x (AD)5-7, F2 (2015) | AD_ch08_At.08 | N/A | 87.2 | CIR278 | View |
16 | TM-1 x 3-79, RIL (2012.v3) | AD_ch08_At.08 | N/A | 49.77 | CIR278b | View |
17 | TM-1 x 3-79, RIL (2012.v3) | AD_ch24_Dt.08 | N/A | 12.78 | CIR278a | View |
Sequence
>CIR0278 ID=CIR0278; Name=CIR0278; organism=Gossypium hirsutum; type=genetic_marker; length=155bp TCCTCCAAGAACCCTCTTAAGTACATGGAAAAACTAAAACACACACACAC ACACAAACTGAGTATACCGGTGTACATTTACTGGATTCAGATACACACTT ATGTGGTTTGTTTTCTCATCAATTCTTTTTCTCTGTCAGAGGTTATGAAG GTGCC
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