CIR0270, CIR0270 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0270
AliasCIR270
Genbank IDAJ567214
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567214
Source Typegenomic
Repeat Motif(AC)10
PCR ConditionAnnealing temperature: 49
Primer 1CIR270_F: CGGAGTTTCAGACATTT
Primer 2CIR270_R: GAGGTGTTACATTTAGTGGT
Product Length184
PolymorphismP_ CIR0270
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567214
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:38418535..38418720 +
CM018222.1chromosomeCM018222.1:36749312..36749505 +
CM018202.1chromosomeCM018202.1:41332721..41333351 +
D5_08chromosomeD5_08:32857715..32857889 +
D10_11chromosomeD10_11:50055957..50056252 +
D10_08chromosomeD10_08:41364796..41364971 +
D10_03chromosomeD10_03:57987372..57987899 +
Dt_chr4chromosomeDt_chr4:15018803..15018986 -
D08chromosomeD08:35860430..35860615 +
A01chromosomeA01:42388401..42389031 +
Ghir_D08chromosomeGhir_D08:38767651..38767836 +
Ghir_D05chromosomeGhir_D05:42403248..42403420 +
Ghir_D05chromosomeGhir_D05:42399552..42399725 +
Ghir_A07chromosomeGhir_A07:14165896..14166076 -
D08chromosomeD08:39857501..39857686 +
D08chromosomeD08:38512852..38513035 +
D08chromosomeD08:36530418..36530601 +
scaffold13781supercontigscaffold13781:90799..91345 +
scaffold1764supercontigscaffold1764:110910..111082 -
Gbar_D05chromosomeGbar_D05:50008072..50008244 -
CM017630.1chromosomeCM017630.1:37672690..37672875 +
CM017656.1chromosomeCM017656.1:39254465..39254644 +
CM017708.1chromosomeCM017708.1:36843659..36843842 +
D08chromosomeD08:39049481..39049666 +
Chr08chromosomeChr08:33491044..33491219 +
Chr04chromosomeChr04:35225427..35225601 +
Chr_04chromosomeChr_04:23230620..23230795 +
Chr04chromosomeChr04:37173990..37174163 +
Chr06chromosomeChr06:10273762..10273938 +
Chr06chromosomeChr06:8899356..8899532 +
Chr04chromosomeCIR0270:1..361 .
Chr04:33322033..33322386 +
Chr4chromosomeCIR0270:1..361 .
Chr4:9283476..9283829 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567214AJ567214Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A91CIR270View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A54.22CIR270View
3TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A23.68CIR270View
4TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A28.9CIR270View
5HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch20_Dt.10N/A32CIR270-174View
6AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A81cir0270View
7TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A28.93CIR270View
Sequence
>CIR0270 ID=CIR0270; Name=CIR0270; organism=Gossypium hirsutum; type=genetic_marker; length=184bp
CGGAGTTTCAGACATTTTATTTTTGTAAAACATTTCCAAAACACAAATCA
TTTCAAATTACTGTGGTATAGTTTCTCAAAATTTTTTCTAAAACGAACAC
ACACACACACACACACAGAGTTAAGTAAAAACATAGGCCGAGTTTTTACA
AACCTAGCTTTAATACCACTAAATGTAACACCTC