CIR0261, CIR0261 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0261
AliasCIR261
Genbank IDAJ567206
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567206
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR261_F: GCTGTAATCAAATAAGCTC
Primer 2CIR261_R: GGAGAGTCGCATCAA
Product Length277
PolymorphismP_ CIR0261
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567206
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:1289453..1289728 +
D03chromosomeD03:1282442..1282714 +
A02chromosomeA02:89078342..89078614 -
CM018217.1chromosomeCM018217.1:1229606..1229881 +
CM018217.1chromosomeCM018217.1:1220528..1220800 +
D5_02chromosomeD5_02:1178076..1178350 +
D5_02chromosomeD5_02:1169035..1169307 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:1327893..1328165 +
D10_02chromosomeD10_02:1128874..1129146 +
CM016615.1chromosomeCM016615.1:1294161..1294433 +
Dt_chr5chromosomeDt_chr5:16502683..16502958 -
Dt_chr5chromosomeDt_chr5:16509669..16509941 -
D03chromosomeD03:1253957..1254232 +
D03chromosomeD03:1247738..1248010 +
A02chromosomeA02:82172652..82172924 -
Ghir_D03chromosomeGhir_D03:1257838..1258113 +
Ghir_D03chromosomeGhir_D03:1247956..1248228 +
Ghir_A02chromosomeGhir_A02:106807693..106807965 -
scaffold15340_objsupercontigscaffold15340_obj:1243..1518 +
D03chromosomeD03:1221820..1222092 +
A02chromosomeA02:107010280..107010552 -
D03chromosomeD03:1248080..1248355 +
D03chromosomeD03:1241062..1241334 +
A02chromosomeA02:104467709..104467981 -
D03chromosomeD03:1255554..1255831 +
D03chromosomeD03:1245607..1245879 +
A02chromosomeA02:103056657..103056929 -
Dt03chromosomeDt03:1538785..1539060 +
Dt03chromosomeDt03:1528809..1529081 +
scaffold20699supercontigscaffold20699:149866..150138 +
scaffold1196supercontigscaffold1196:316355..316630 +
scaffold1196supercontigscaffold1196:306379..306651 +
Gbar_D03chromosomeGbar_D03:1222215..1222490 +
Gbar_D03chromosomeGbar_D03:1213137..1213409 +
Gbar_A02chromosomeGbar_A02:98939629..98939901 -
D03chromosomeD03:1228276..1228551 +
D03chromosomeD03:1220475..1220747 +
A02chromosomeA02:100884004..100884276 -
CM017625.1chromosomeCM017625.1:1221252..1221527 +
CM017625.1chromosomeCM017625.1:1216786..1217058 +
CM017611.1chromosomeCM017611.1:103863119..103863391 -
CM017651.1chromosomeCM017651.1:1298372..1298647 +
CM017651.1chromosomeCM017651.1:1272071..1272343 +
CM017637.1chromosomeCM017637.1:108618326..108618598 -
CM017703.1chromosomeCM017703.1:1244673..1244948 +
CM017703.1chromosomeCM017703.1:1240166..1240438 +
CM017689.1chromosomeCM017689.1:101033005..101033277 -
D03chromosomeD03:1292763..1293038 +
D03chromosomeD03:1285750..1286022 +
A02chromosomeA02:106911867..106912139 -
Chr02chromosomeChr02:91663704..91663976 -
Chr02chromosomeChr02:101275265..101275537 -
Chr02chromosomeChr02:1186695..1186970 +
Chr02chromosomeChr02:1177666..1177938 +
B_04chromosomeB_04:72669946..72670220 -
Chr03chromosomeChr03:1196931..1197203 +
chr03_6436353chromosomechr03_6436353:363..635 +
Chr03_3710795chromosomeChr03_3710795:487..759 +
Chr03chromosomeChr03:1231511..1231783 +
E02chromosomeE02:972525..972797 +
F02chromosomeF02:1149417..1149689 +
Chr02chromosomeChr02:138281689..138281961 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567206AJ567206Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A63.94CIR261View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch17_Dt.03N/A85.4CIR261View
3(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch17_Dt.03N/A0CIR261View
4AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A157cir0261View
Sequence
>CIR0261 ID=CIR0261; Name=CIR0261; organism=Gossypium hirsutum; type=genetic_marker; length=277bp
GCTGTAATCAAATAAGCTCAAATGTAAGAGTTAAATTAACACGTAAACTG
ATGTGTGTGTGTGTGTATGTACTGCTTTTGGGTTTTTTAAGGTATTCTCC
ATTACCATTTTGAATCTTTATCAGCCATGATGGGGTGTCAATCGAGTCAA
ACCAAAGGGGGTAATGCCGAATGGACATCGCAAGTTAAACCGGATTCTCA
GTTAGAAGCTGATTTGAGCTCGTACGAGGCTGCTTGTAGACAAGATTCGA
CTCTGCAACATTTTGATGCGACTCTCC