CIR0255, CIR0255 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0255
AliasCIR255
Genbank IDAJ567200
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567200
Source Typegenomic
Repeat Motif(TG)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR255_F: TGCATTCAACCCAAA
Primer 2CIR255_R: AAGGAGAAAGAGTGTAAAGG
Product Length130
PolymorphismP_ CIR0255
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567200
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:47045675..47045804 -
A05chromosomeA05:66674104..66674233 -
CM018206.1chromosomeCM018206.1:63858998..63859127 +
CM018219.1chromosomeCM018219.1:46710573..46710697 -
D5_05chromosomeD5_05:42827147..42827278 -
D10_05chromosomeD10_05:16100983..16101106 +
CM016618.1chromosomeCM016618.1:27954046..27954168 +
At_chr9chromosomeAt_chr9:19071833..19072001 +
Dt_chr9chromosomeDt_chr9:21677300..21677421 -
D05chromosomeD05:45846922..45847051 -
A05chromosomeA05:61073994..61074123 -
Ghir_D05chromosomeGhir_D05:46771133..46771262 -
A05chromosomeA05:71402390..71402519 +
D05chromosomeD05:47868681..47868810 -
A05chromosomeA05:69996076..69996205 +
D05chromosomeD05:48792626..48792755 -
A05chromosomeA05:69141916..69142045 +
D05chromosomeD05:47285482..47285611 -
Dt05chromosomeDt05:49147201..49147325 -
Dt05chromosomeDt05:49137552..49137682 -
scaffold7353supercontigscaffold7353:285219..285342 +
scaffold7353supercontigscaffold7353:286968..287097 +
scaffold7353supercontigscaffold7353:288868..288998 -
scaffold14supercontigscaffold14:87296..87420 -
scaffold14supercontigscaffold14:77647..77777 -
Scaffold3724supercontigScaffold3724:37266..37395 +
Gbar_D05chromosomeGbar_D05:45634985..45635109 +
A05chromosomeA05:67493697..67493826 +
D05chromosomeD05:48563120..48563244 -
CM017627.1chromosomeCM017627.1:47676301..47676425 -
CM017653.1chromosomeCM017653.1:48823879..48824004 -
CM017692.1chromosomeCM017692.1:66584631..66584760 +
CM017705.1chromosomeCM017705.1:47791788..47791912 -
A05chromosomeA05:71155065..71155194 +
D05chromosomeD05:49566107..49566236 -
Chr05chromosomeChr05:43316987..43317117 -
B_05chromosomeB_05:22026191..22026341 -
Chr09chromosomeChr09:43643576..43643706 -
Chr09chromosomeChr09:46679160..46679293 -
Chr09chromosomeChr09:32183184..32183501 -
Chr09chromosomeChr09:33162542..33162785 -
E05chromosomeE05:76945431..76945557 -
F05chromosomeF05:57598068..57598203 +
Chr05chromosomeChr05:37529501..37529643 -
Chr09chromosomeCIR0255:1..243 .
Chr09:42897484..42897727 -
Chr8chromosomeCIR0255:1..243 .
Chr8:63057772..63058015 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567200AJ567200Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A190.6CIR255View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A145.06CIR255View
3TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A126.64CIR255View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A60.1CIR255View
5AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A283cir0255View
6TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A60.06CIR255View
Sequence
>CIR0255 ID=CIR0255; Name=CIR0255; organism=Gossypium hirsutum; type=genetic_marker; length=130bp
TGCATTCAACCCAAAAAACACTAATTTATATATATGTGTGTGTGTGTGTG
TTTTATGCTTCTGAATCACTCAATATTCTCGATGAATGTCTTTTTTATTT
TTCTTTCTCCCCTTTACACTCTTTCTCCTT