CIR0254, CIR0254 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0254
AliasCIR254
Genbank IDAJ567199
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567199
Source Typegenomic
Repeat Motif(GTAC)6(CA)8
PCR ConditionAnnealing temperature: 50
Primer 1CIR254_F: CTCATCACCATCAAGAAA
Primer 2CIR254_R: CTCTCACCACCACCC
Product Length194
PolymorphismP_ CIR0254
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567199
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:3359681..3359863 +
A11chromosomeA11:3291824..3292015 +
CM018225.1chromosomeCM018225.1:3161094..3161278 +
CM018212.1chromosomeCM018212.1:3469599..3469786 +
D5_11chromosomeD5_11:62745067..62745248 -
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:120941328..120941512 -
D10_11chromosomeD10_11:3099290..3099486 +
CM016624.1chromosomeCM016624.1:3808376..3808543 -
Dt_chr7chromosomeDt_chr7:6989111..6989293 -
At_chr7chromosomeAt_chr7:4337824..4338015 -
D11chromosomeD11:3332663..3332845 +
A11chromosomeA11:3098382..3098573 +
Ghir_D11chromosomeGhir_D11:3273544..3273726 +
Ghir_A11chromosomeGhir_A11:3529864..3530055 +
D11chromosomeD11:3204309..3204491 +
A11chromosomeA11:3389172..3389363 +
D11chromosomeD11:3298568..3298750 +
A11chromosomeA11:3410104..3410295 +
D11chromosomeD11:3240291..3240473 +
A11chromosomeA11:3558972..3559163 +
Dt11chromosomeDt11:4035611..4035795 +
At11chromosomeAt11:3988399..3988586 +
scaffold21103supercontigscaffold21103:283741..283925 +
scaffold13328supercontigscaffold13328:452023..452210 +
Gbar_D11chromosomeGbar_D11:3215038..3215222 +
Gbar_A11chromosomeGbar_A11:3139763..3139950 +
D11chromosomeD11:3233375..3233559 +
A11chromosomeA11:3510720..3510907 +
CM017633.1chromosomeCM017633.1:3158968..3159150 +
CM017620.1chromosomeCM017620.1:3550431..3550618 +
CM017659.1chromosomeCM017659.1:3264608..3264790 +
CM017646.1chromosomeCM017646.1:3608272..3608461 +
CM017711.1chromosomeCM017711.1:3197373..3197551 +
CM017698.1chromosomeCM017698.1:3519525..3519712 +
D11chromosomeD11:3273109..3273291 +
A11chromosomeA11:3596603..3596794 +
Chr11chromosomeChr11:3586585..3586766 +
Chr11chromosomeChr11:3497343..3497528 +
Chr11chromosomeChr11:60227462..60227644 -
B_11chromosomeB_11:3531557..3531736 +
Chr07chromosomeChr07:3047756..3047931 +
chr07chromosomechr07:2861151..2861340 +
Chr_07chromosomeChr_07:2840635..2840820 +
Chr07chromosomeChr07:3228169..3228355 +
Chr07chromosomeChr07:2432733..2432920 +
Chr07chromosomeChr07:2444431..2444618 +
Chr07chromosomeChr07:2654826..2655003 +
E11chromosomeE11:3796433..3796614 +
F11chromosomeF11:2996445..2996656 +
Chr11chromosomeChr11:182498340..182498525 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567199AJ567199Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A11.9CIR254View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A210.86CIR254View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch21_Dt.11N/A165.93CIR254View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch11_At.11N/A66.26CIR254View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch21_Dt.11N/A151.05CIR254View
6Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A209.83CIR254View
7Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch11_At.11N/A218.2CIR254aView
8Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch21_Dt.11N/A265.2CIR254bView
9AD-genome wide Reference Map (2009)AD_ch11_At.11N/A280cir0254View
10AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A107cir0254View
Sequence
>CIR0254 ID=CIR0254; Name=CIR0254; organism=Gossypium hirsutum; type=genetic_marker; length=194bp
CTCATCACCATCAAGAAAACAATTAAAACATTAACCAACCACACACACAC
ACACACACGTACGTACGTACGTACGTACGTACATTAGCTTAATTCAAACC
AAATAAACAAAAAAGGGAGGGTTTTTTAAAACAGACCCATCTTCAAGTCC
AAGTTGCAAGAACTTGGACTGAGTAAAAGGGGTGGTGGTGAGAG