|
Marker Overview
Name | CIR0242 |
Alias | CIR242
|
Genbank ID | AJ567187 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567187
|
Source Type | genomic |
Repeat Motif | (TG)8(N)81(A)17 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR242_F: GCATACAAACATAGGAACA |
Primer 2 | CIR242_R: GTGGCAATTACACTTCAC |
Product Length | 242 |
Polymorphism | P_ CIR0242 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch19_Dt.05 | N/A | 19 | CIR242 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch19_Dt.05 | N/A | 15.52 | CIR242 | View |
3 | Yumian-1 x T586, RIL (2006) | AD_ch05_At.05 | N/A | 0 | CIR242 | View |
4 | (YM1 x CCRI35) x (YM1 x 7235), 4WC (2012) | AD_ch19_Dt.05 | N/A | 39.9 | CIR242 | View |
5 | Yumian-1 x T586, RIL (2015) | AD_ch05_At.05 | N/A | 0.7 | CIR242 | View |
6 | Yumian-1 x 7235, RIL (2015) | AD_ch05_At.05 | N/A | 38.8 | CIR242 | View |
7 | W10 x TM-1, F2:3 (2015) | AD_ch05_At.05 | N/A | 40.8 | CIR242 | View |
8 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch05_At.05 | N/A | 114.6 | CIR242 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch19_Dt.05 | N/A | 70 | cir0242 | View |
10 | Yumian-1 x T586, RIL (2009) | AD_ch19_Dt.05 | N/A | 81.4 | CIR242/220y(C19) | View |
11 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch05_At.05 | N/A | 4.08 | CIR242 | View |
Sequence
>CIR0242 ID=CIR0242; Name=CIR0242; organism=Gossypium hirsutum; type=genetic_marker; length=242bp GCATACAAACATAGGAACAGTGACAATATAGATATATAAATTTGTGAGTG ATAATTGTTGAGTCATGTACACAATTATTATATATAGGAACTGATTAGAT GCTATACTCTGTGTGTGTGTGTGTGTTGCATTATAAAAATGATATTTGAG GTATAAAGTAATGCAAGTAATAAATCCGGAATGGATATGGTTGTAAACCA AAGGGAAAAAAAAAAAAAAAAAGGGTGAAGTGTAATTGCCAC
|