CIR0240, CIR0240 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0240
AliasCIR240
Genbank IDAJ567185
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567185
Source Typegenomic
Repeat Motif(AC)9
PCR ConditionAnnealing temperature: 55
Primer 1CIR240_F: CTTCCGATACCCTCG
Primer 2CIR240_R: TGAAGGAGGCTGTTATG
Product Length243
PolymorphismP_ CIR0240
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567185
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:24025208..24025444 +
A05chromosomeA05:26691506..26691748 +
CM018219.1chromosomeCM018219.1:22641871..22642109 +
CM018206.1chromosomeCM018206.1:25634881..25635123 +
D5_05chromosomeD5_05:21441607..21441845 +
KI_05chromosomeKI_05:19096403..19096635 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:26109967..26110209 +
D10_05chromosomeD10_05:39051785..39052025 -
CM016618.1chromosomeCM016618.1:85029742..85029978 -
Dt_chr11chromosomeDt_chr11:5175169..5175405 -
D05chromosomeD05:23137208..23137444 +
A05chromosomeA05:23535284..23535526 +
Ghir_D05chromosomeGhir_D05:23320022..23320258 +
Ghir_A05chromosomeGhir_A05:25506188..25506430 +
D05chromosomeD05:22743666..22743902 +
A05chromosomeA05:25580793..25581035 +
D05chromosomeD05:23162939..23163175 +
A05chromosomeA05:26422771..26423013 +
D05chromosomeD05:23041531..23041767 +
At05chromosomeAt05:20753852..20754094 +
scaffold13702supercontigscaffold13702:78625..78867 +
scaffold3122supercontigscaffold3122:28899..29137 -
Scaffold91supercontigScaffold91:862285..862527 +
Gbar_D05chromosomeGbar_D05:23167264..23167502 +
D05chromosomeD05:22955390..22955628 +
A05chromosomeA05:25975929..25976171 +
CM017627.1chromosomeCM017627.1:22843461..22843699 +
CM017614.1chromosomeCM017614.1:26005006..26005250 +
CM017653.1chromosomeCM017653.1:23287761..23287999 +
CM017640.1chromosomeCM017640.1:26245928..26246170 +
CM017705.1chromosomeCM017705.1:23005321..23005559 +
CM017692.1chromosomeCM017692.1:25676152..25676394 +
D05chromosomeD05:23648669..23648905 +
A05chromosomeA05:26868244..26868486 +
Chr05chromosomeChr05:27316921..27317163 +
Chr05chromosomeChr05:26481851..26482093 +
Chr05chromosomeChr05:21508011..21508249 +
B_05chromosomeB_05:59970930..59971174 -
Chr09chromosomeChr09:21957253..21957491 +
chr09_6503089chromosomechr09_6503089:360..598 -
Chr_09chromosomeChr_09:18004666..18004906 +
Chr09chromosomeChr09:22665315..22665555 +
Chr09_1205565chromosomeChr09_1205565:4821..5061 +
E05chromosomeE05:28565760..28565996 +
F05chromosomeF05:22615147..22615381 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567185AJ567185Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A118.5CIR240View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A101.86CIR240View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A245cir0240View
Sequence
>CIR0240 ID=CIR0240; Name=CIR0240; organism=Gossypium hirsutum; type=genetic_marker; length=243bp
CTTCCGATACCCTCGATGGAGGTCAATGCAAACATAATCTTCTGCTTCCC
ATCAACGTTGGTGTTCAGCACACGTAAAATGTGCTGAAAATCTTCGTTGG
CCACCAGAGACTACACAAGCAAGCATTAAAATGAAGTTAGAAGCTATAAT
CTTCAGGGGAAAAGACAAACACACACACACACACACAACCAAACTTAAAT
AAAGTAAAACACATTTTAGAAACTCTCATAACAGCCTCCTTCA