CIR0238, CIR0238 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0238
AliasCIR238
Genbank IDAJ567183
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567183
Source Typegenomic
Repeat Motif(TG)9
PCR ConditionAnnealing temperature: 55
Primer 1CIR238_F: TCAACTCACCGATTACAC
Primer 2CIR238_R: TCTTCATTCGGGCTT
Product Length336
PolymorphismP_ CIR0238
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567183
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567183AJ567183Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch20_Dt.10N/A7CIR238-331View
2TM-1 x 3-79, RIL (2012)AD_ch07_At.07N/A21.02CIR238View
3Yumian-1 x T586, RIL (2006)AD_ch07_At.07N/A17.7CIR238View
4Yumian-1 x T586, RIL (2015)AD_ch07_At.07N/A14.3CIR238View
5TM-1 x 3-79, RIL (2014)AD_ch07_At.07N/A118CIR238View
6CCRI-35 x Yumian-1, RIL (2015)AD_ch11_At.11N/A108.3CIR238View
7Yumian-1 x T586, RIL (2009)AD_ch07_At.07N/A22.8CIR238/400yView
8TM-1 x 3-79, RIL (2012.v3)AD_ch07_At.07N/A118.03CIR238View
Sequence
>CIR0238 ID=CIR0238; Name=CIR0238; organism=Gossypium hirsutum; type=genetic_marker; length=336bp
TCAACTCACCGATTACACCCGCTTACATGAAGTAGAAGCCCTTATTACAT
CAATACATCTGTGTGTGTGTGTGTGTGTTTTCCGCTTCCTCTTCTTTCTT
TTGGCCCTTTTTTATTTTTCTCTAAAAGCCTCACCTACAGCTTACTCCGT
TCCCTGACATTTTCCCTTAAAATTACACTGAAAAAACTCACATGTTCCCC
AAACTTCATCTATTACTCAAGTTTCGATTCCTTGTCTCCGCATCGAACCG
CCACTTTACACAGTCAAACTCTGTTTTTCGAATTACCGCCACTATTCGAC
GATACGCCCAAACCAAGTTGAAAGCCCGAATGAAGA