CIR0237, CIR0237 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0237
AliasCIR237
Genbank IDAJ567182
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567182
Source Typegenomic
Repeat Motif(TG)14
PCR ConditionAnnealing temperature: 55
Primer 1CIR237_F: AATGTAATGTGATGCTGG
Primer 2CIR237_R: CAGCTTTAAGAGAAATGAAC
Product Length129
PolymorphismP_ CIR0237
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567182
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:62626305..62626423 +
A08chromosomeA08:116611445..116611573 +
CM018222.1chromosomeCM018222.1:58934493..58934611 +
CM018209.1chromosomeCM018209.1:111789172..111789296 +
D5_08chromosomeD5_08:55175978..55176096 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:121503989..121504121 +
D10_08chromosomeD10_08:6074365..6074483 -
scaffold3874.1supercontigscaffold3874.1:50457..50575 +
scaffold4104.1supercontigscaffold4104.1:23803..23931 -
D08chromosomeD08:59298319..59298437 +
A08chromosomeA08:96786067..96786195 +
Ghir_D08chromosomeGhir_D08:61858778..61858896 +
Ghir_A08chromosomeGhir_A08:115149489..115149614 +
D08chromosomeD08:62352515..62352633 +
A08chromosomeA08:117899941..117900069 +
D08chromosomeD08:61695537..61695655 +
A08chromosomeA08:117967431..117967559 +
D08chromosomeD08:58965158..58965276 +
A08chromosomeA08:113922600..113922728 +
Dt08chromosomeDt08:61959136..61959254 +
At08chromosomeAt08:101559110..101559232 +
scaffold7896supercontigscaffold7896:607617..607735 +
scaffold1221supercontigscaffold1221:821628..821750 +
Gbar_D08chromosomeGbar_D08:59039717..59039835 +
Gbar_A08chromosomeGbar_A08:112469264..112469386 +
D08chromosomeD08:60930593..60930711 +
A08chromosomeA08:113534819..113534943 +
CM017630.1chromosomeCM017630.1:60606170..60606288 +
CM017617.1chromosomeCM017617.1:111946803..111946917 +
CM017656.1chromosomeCM017656.1:62850414..62850532 +
CM017643.1chromosomeCM017643.1:121583747..121583873 +
CM017708.1chromosomeCM017708.1:59311884..59312002 +
CM017695.1chromosomeCM017695.1:112647690..112647814 +
D08chromosomeD08:62469919..62470037 +
A08chromosomeA08:119850781..119850909 +
Chr08chromosomeChr08:124151027..124151149 +
Chr08chromosomeChr08:125149218..125149350 +
Chr08chromosomeChr08:56055848..56055966 +
Chr04chromosomeChr04:57533662..57533780 +
chr04chromosomechr04:43368927..43369045 +
Chr04_5146739chromosomeChr04_5146739:4669..4787 +
Chr04chromosomeChr04:59977231..59977349 +
Chr04chromosomeChr04:37973211..37973329 +
Chr04chromosomeChr04:32005971..32006089 +
Chr04chromosomeChr04:38799190..38799308 +
F08chromosomeF08:98115223..98115347 +
Chr08chromosomeChr08:12118808..12118924 -
Chr04chromosomeCIR0237:1..187 .
Chr04:55714470..55714646 +
Chr8chromosomeCIR0237:1..187 .
Chr8:4944839..4945015 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567182AJ567182Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch08_At.08N/A73CIR237View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch08_At.08N/A51.5CIR237View
3TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A91.47CIR237View
4Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A51.9CIR237View
5TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A101.3CIR237View
6Handan-208 x Pima-90, F2:3 (2007)AD_ch08_At.08N/A70.5CIR237a*View
7Handan-208 x Pima-90, F2:3 (2007)AD_ch08_At.08N/A125.5CIR237bView
8AD-genome wide Reference Map (2009)AD_ch08_At.08N/A53cir0237View
9TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A101.25CIR237View
Sequence
>CIR0237 ID=CIR0237; Name=CIR0237; organism=Gossypium hirsutum; type=genetic_marker; length=129bp
AATGTAATGTGATGCTGGTAACTGGTTTTCCACTATTGCTGTTTAGGCAC
ACACACACACACACACACACACACAATCCTAAGCTGGTATATCTTTATGT
ATTTTAATGGTTCATTTCTCTTAAAGCTG