CIR0233, CIR0233 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0233
AliasCIR233
Genbank IDAJ567179
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567179
Source Typegenomic
Repeat Motif(GT)10
PCR ConditionAnnealing temperature: 51
Primer 1CIR233_F: AGGCAGTAGCATTTATCAG
Primer 2CIR233_R: GTGTTGGTTGTTTATGGTT
Product Length187
PolymorphismP_ CIR0233
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567179
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567179AJ567179Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch26_Dt.12N/A173.7CIR233View
2Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A85.45CIR233View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch26_Dt.12N/A140.4CIR233View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch26_Dt.12N/A93.06CIR233View
5SG 747 x Giza 75, BIL (2013)AD_ch26_Dt.12N/A137.7CIR233View
6AD-genome wide Reference Map (2009)AD_ch06_At.06N/A110cir0233View
7AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A19cir0233View
Sequence
>CIR0233 ID=CIR0233; Name=CIR0233; organism=Gossypium hirsutum; type=genetic_marker; length=187bp
AGGCAGTAGCATTTATCAGCTCAATCGTGTGTGTGTGTGTGTGTGTTGTG
ACATGGAGTCCTCAGTTTATTTTTTATCCCAACATACCCATGTCTGGCAC
CTCTTGGACACTTCGCCATTCATACAGGTATGACACTGGTTCTAAAAATT
AATTTAAAAAATTTCCAAAACCATAAACAACCAACAC