CIR0227, CIR0227 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0227
AliasCIR227
Genbank IDAJ567173
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567173
Source Typegenomic
Repeat Motif(AC)10
PCR ConditionAnnealing temperature: 55
Primer 1CIR227_F: ATCAGCCATCCAGAAA
Primer 2CIR227_R: TAAGATTGAAGTGAAGGTGT
Product Length155
PolymorphismP_ CIR0227
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567173
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:9660824..9660967 +
A09chromosomeA09:10489557..10489712 +
CM018223.1chromosomeCM018223.1:8719917..8720060 +
CM018210.1chromosomeCM018210.1:10087022..10087175 +
D5_09chromosomeD5_09:9411138..9411280 +
D10_09chromosomeD10_09:35306036..35306179 -
CM016622.1chromosomeCM016622.1:81920527..81920668 -
Dt_chr6chromosomeDt_chr6:34684465..34684620 +
Dt_chr6chromosomeDt_chr6:39497459..39497602 -
D09chromosomeD09:9664499..9664642 +
A09chromosomeA09:10227057..10227212 +
Ghir_D09chromosomeGhir_D09:9694438..9694581 +
Ghir_A09chromosomeGhir_A09:10493071..10493226 +
D09chromosomeD09:9351899..9352042 +
A09chromosomeA09:10090204..10090359 +
D09chromosomeD09:9323046..9323189 +
A09chromosomeA09:10501245..10501398 +
D09chromosomeD09:9321023..9321166 +
A09chromosomeA09:10675216..10675371 +
scaffold6470supercontigscaffold6470:177904..178057 -
scaffold14816supercontigscaffold14816:31023..31176 -
scaffold14816supercontigscaffold14816:32356..32499 -
Gbar_D09chromosomeGbar_D09:9942152..9942295 +
Gbar_A09chromosomeGbar_A09:10179187..10179340 +
D09chromosomeD09:11129761..11129904 +
A09chromosomeA09:10156144..10156297 +
CM017631.1chromosomeCM017631.1:9094759..9094900 +
CM017618.1chromosomeCM017618.1:10227413..10227566 +
CM017657.1chromosomeCM017657.1:8623774..8623917 +
CM017644.1chromosomeCM017644.1:10298597..10298750 +
CM017709.1chromosomeCM017709.1:9160585..9160728 +
CM017696.1chromosomeCM017696.1:10355834..10355987 +
D09chromosomeD09:9799192..9799335 +
A09chromosomeA09:10701866..10702021 +
Chr09chromosomeChr09:10619644..10619801 +
Chr09chromosomeChr09:9296555..9296698 +
B_09chromosomeB_09:10853680..10853826 +
chr06chromosomechr06:7944088..7944231 +
Chr06chromosomeChr06:8876284..8876427 +
Chr06chromosomeChr06:5285368..5285511 +
Chr06chromosomeChr06:6769998..6770141 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567173AJ567173Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch09_At.09N/A24.9CIR227View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch09_At.09N/A35.95CIR227View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch09_At.09N/A27.76CIR227View
4Yumian-1 x T586, F2:7 (2008)AD_ch09_At.09N/A24.5CIR227View
5Yumian-1 x T586, RIL (2006)AD_ch23_Dt.09N/A26CIR227View
6Yumian-1 x T586, RIL (2015)AD_ch23_Dt.09N/A0CIR227View
7AD-genome wide Reference Map (2009)AD_ch09_At.09N/A46cir0227View
8Yumian-1 x T586, RIL (2009)AD_ch09_At.09N/A26.6CIR227/170y(C9)View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch09_At.09N/A23CIR227View
Sequence
>CIR0227 ID=CIR0227; Name=CIR0227; organism=Gossypium hirsutum; type=genetic_marker; length=155bp
ATCAGCCATCCAGAAATCAAAACCATACAGGAAACATTTTTCCCAAGAAG
ATATAATAGAAAAAGAGCAAAGAAATTAACAGTAAGAAAAGATGAAGGCA
AATATATATATATACACACACACACACACACACATACACCTTCACTTCAA
TCTTA