CIR0222, CIR0222 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0222
AliasCIR222
Genbank IDAJ567168
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567168
Source Typegenomic
Repeat Motif(GT)14
PCR ConditionAnnealing temperature: 55
Primer 1CIR222_F: TCATCAACAATCCTTCC
Primer 2CIR222_R: TACTGTCCCTCTTGCAT
Product Length291
PolymorphismP_ CIR0222
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:56494858..56495149 -
CM018219.1chromosomeCM018219.1:55574468..55574745 -
D5_05chromosomeD5_05:49892593..49892874 -
At_chr2chromosomeAt_chr2:25098426..25098717 -
D05chromosomeD05:54287946..54288250 -
Ghir_D05chromosomeGhir_D05:55461815..55462105 -
D05chromosomeD05:56400403..56400694 -
D05chromosomeD05:56120126..56120417 -
D05chromosomeD05:55173714..55174005 -
Dt05chromosomeDt05:55625906..55626183 -
scaffold14683supercontigscaffold14683:8184..8461 -
Gbar_D05chromosomeGbar_D05:55689349..55689626 -
D05chromosomeD05:58393513..58393790 -
CM017653.1chromosomeCM017653.1:57548750..57549035 -
CM017705.1chromosomeCM017705.1:56371619..56371896 -
D05chromosomeD05:58463688..58463979 -
Chr05chromosomeChr05:50803804..50804085 -
Chr09chromosomeChr09:31642803..31643076 -
Chr09chromosomeCIR0222:3..395 .
Chr09:51079348..51079731 -
scaffold333supercontigCIR0222:3..395 .
scaffold333:1290327..1290710 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567168AJ567168Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch19_Dt.05N/A26.9CIR222View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A156.97CIR222View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch04_At.04N/A56.94CIR222View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch04_At.04N/A45.26CIR222View
5Guazuncho-2 x VH8-4602, RIL (2009)AD_ch19_Dt.05N/A52.97CIR222View
6Handan-208 x Pima-90, F2:3 (2007)AD_ch19_Dt.05N/A49CIR222View
7TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A134.97CIR222View
8Emian-22 x 3-79, BC1 (2011)AD_ch04_At.04N/A100CIR222View
9TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A51.4CIR222View
10Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch04_At.04N/A116.5CIR222bView
11Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A210.5CIR222aView
12AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A290cir0222View
13AD-genome wide Reference Map (2009)AD_ch04_At.04N/A138cir0222View
14TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A51.37CIR222View
15PD 94042 x (AD)4-08, F2 (2016)AD_ch04_At.04N/A42CIR222aView
16PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A199CIR222bView
Sequence
>CIR0222 ID=CIR0222; Name=CIR0222; organism=Gossypium hirsutum; type=genetic_marker; length=291bp
TCATCAACAATCCTTCCCCTGTGCCGTGTAAAGAGCAAGAACATATATGA
TGTTTTCCATTGTCAAGAACTAAATTTGAAAAAGGNAAGGTCAAAAGTTT
TACCTCTCAAGAACAAACTTTCCTTCTTGTACTTTTGACTCTTCTCGTAT
GCTGNCTCCTGGCCGACAAAGATGGAAAATTTAGCAAAGGTTCACAATCT
TCAGAACTCGACTTTGCTGAATAAAGGTGAGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGCGTGTGCGCGCGCGCATGCAAGAGGGACAGTA