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Marker Overview
| Name | CIR0251 |
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| Alias | CIR251
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| Genbank ID | AJ567196 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567196
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| Source Type | genomic |
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| Repeat Motif | (TG)6 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | CIR251_F: ACCCATCTTCTGGTGA |
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| Primer 2 | CIR251_R: CAAAGAGAAACAAGTAGCA |
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| Product Length | 179 |
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| Polymorphism | P_ CIR0251 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch17_Dt.03 | N/A | 53.3 | CIR251 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch17_Dt.03 | N/A | 38.62 | CIR251 | View |
| 3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch17_Dt.03 | N/A | 38.57 | CIR251 | View |
| 4 | TM-1 x 3-79, RIL (2012) | AD_ch17_Dt.03 | N/A | 58.66 | CIR251 | View |
| 5 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch17_Dt.03 | N/A | 59.4 | CIR251 | View |
| 6 | TM-1 x 3-79, RIL (2014) | AD_ch17_Dt.03 | N/A | 40.1 | CIR251 | View |
| 7 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch02_At.02 | N/A | 44.9 | CIR251 | View |
| 8 | AD-genome wide Reference Map (2009) | AD_ch17_Dt.03 | N/A | 140 | cir0251 | View |
| 9 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch02_At.02 | N/A | 65.31 | CIR251 | View |
| 10 | TM-1 x 3-79, RIL (2012.v3) | AD_ch17_Dt.03 | N/A | 40.15 | CIR251 | View |
| 11 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch17_Dt.03 | N/A | 123.5 | CIR251 | View |
Sequence
>CIR0251 ID=CIR0251; Name=CIR0251; organism=Gossypium hirsutum; type=genetic_marker; length=179bp
ACCCATCTTCTGGTGAAAATCTTTTTGTTCTTATGCTTTTTCTTTTCTTC
TTGCTATCTGTAAAGTGTAAAGCTTTTCTCTTGTCAGTTTTGCTTTTATT
GTTCAAAGAAAAGTTTTGTGTGTGTGTGGTACAGTGTTATTGCATTGACT
TGTTTAATGATGCTACTTGTTTCTCTTTG
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