CIR0219, CIR0219 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0219
AliasCIR219
Genbank IDAJ567165
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567165
Source Typegenomic
Repeat Motif(GT)25
PCR ConditionAnnealing temperature: 55
Primer 1CIR219_F: TTGCCTTGGTCTTTGT
Primer 2CIR219_R: CGAAACCATTAACTTCCT
Product Length140
PolymorphismP_ CIR0219
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567165
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:14244409..14244548 -
CM018219.1chromosomeCM018219.1:13328410..13328555 -
D5_05chromosomeD5_05:12615092..12615225 -
D05chromosomeD05:13339871..13340010 -
Ghir_D05chromosomeGhir_D05:13877474..13877611 -
D05chromosomeD05:13534433..13534572 -
D05chromosomeD05:13715128..13715263 -
D05chromosomeD05:13597864..13598001 -
scaffold21890supercontigscaffold21890:38907..39052 +
Gbar_D05chromosomeGbar_D05:13771549..13771690 -
D05chromosomeD05:13746193..13746338 -
CM017627.1chromosomeCM017627.1:13653497..13653628 -
CM017653.1chromosomeCM017653.1:14074556..14074675 -
CM017705.1chromosomeCM017705.1:13787340..13787473 -
D05chromosomeD05:14084696..14084835 -
Chr05chromosomeChr05:12669131..12669266 -
Chr09chromosomeCIR0219:1..371 .
Chr09:12572934..12573300 -
Chr9chromosomeCIR0219:1..371 .
Chr9:20091736..20092100 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567165AJ567165Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A92.5CIR219View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A75.34CIR219View
3TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A68.63CIR219View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A116.9CIR219View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch08_At.08N/A58.5CIR219View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A158.6CIR219View
7AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A164cir0219View
8TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A116.94CIR219View
9PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A96CIR219View
Sequence
>CIR0219 ID=CIR0219; Name=CIR0219; organism=Gossypium hirsutum; type=genetic_marker; length=140bp
TTGCCTTGGTCTTTGTAACATCTCAATGGCTGCATGAACAGGCGCTTATT
GCCTTGATTGGTAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGAATATTAAAGGAAGTTAATGGTTTCG