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Marker Overview
Name | CIR0216 |
Alias | CIR216
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Genbank ID | AJ567162 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567162
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Source Type | genomic |
Repeat Motif | (CA)9 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR216_F: ATCTGAACCATCATCCTC |
Primer 2 | CIR216_R: TTCTGATTGGCACTTTC |
Product Length | 139 |
Polymorphism | P_ CIR0216 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch18_Dt.13 | N/A | 37.1 | CIR216 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch18_Dt.13 | N/A | 9.4 | CIR216 | View |
3 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch18_Dt.13 | N/A | 10.02 | CIR216 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch18_Dt.13 | N/A | 10.62 | CIR216 | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch18_Dt.13 | N/A | 102.99 | CIR216 | View |
6 | Yumian-1 x T586, RIL (2006) | AD_ch18_Dt.13 | N/A | 96.8 | CIR216 | View |
7 | Li2 x DP5690, F2 (2011) | AD_ch18_Dt.13 | N/A | 2.43 | CIR216 | View |
8 | H18 x 3-79, F2 (2005) | AD_ch18_Dt.13 | N/A | 173.1 | CIR216 | View |
9 | Yumian-1 x T586, RIL (2015) | AD_ch18_Dt.13 | N/A | 78.3 | CIR216 | View |
10 | Yumian-1 x 7235, RIL (2015) | AD_ch18_Dt.13 | N/A | 46.8 | CIR216 | View |
11 | TM-1 x 3-79, RIL (2014) | AD_ch18_Dt.13 | N/A | 108 | CIR216 | View |
12 | GX1135 x GX100-2, F2 (2013) | AD_ch18_Dt.13 | N/A | 89.8 | CIR216 | View |
13 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch18_Dt.13 | N/A | 5 | CIR216-137 | View |
14 | AD-genome wide Reference Map (2009) | AD_ch18_Dt.13 | N/A | 84 | cir0216 | View |
15 | Yumian-1 x T586, RIL (2009) | AD_ch18_Dt.13 | N/A | 0 | CIR216/150t(C18) | View |
16 | GB713 x Nem-X, F2 (2011) | AD_ch18_Dt.13 | N/A | 81.2 | CIR216_141 | View |
17 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch18_Dt.13 | N/A | 104.7 | CIR216 | View |
18 | TM-1 x 3-79, RIL (2012.v3) | AD_ch18_Dt.13 | N/A | 107.98 | CIR216 | View |
Sequence
>CIR0216 ID=CIR0216; Name=CIR0216; organism=Gossypium hirsutum; type=genetic_marker; length=139bp ATCTGAACCATCATCCTCAAATGCCTGCACACACACACACACACAAAAAA AAACAAGAAAAAAGAGAAAGTCCCAATTAGTTAAGGGATTATCAATCAAG TTCTGCAACTGTATGAGTGAAGGAAAGTGCCAATCAGAA
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