CIR0216, CIR0216 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0216
AliasCIR216
Genbank IDAJ567162
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567162
Source Typegenomic
Repeat Motif(CA)9
PCR ConditionAnnealing temperature: 55
Primer 1CIR216_F: ATCTGAACCATCATCCTC
Primer 2CIR216_R: TTCTGATTGGCACTTTC
Product Length139
PolymorphismP_ CIR0216
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567162
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567162AJ567162Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch18_Dt.13N/A37.1CIR216View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch18_Dt.13N/A9.4CIR216View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch18_Dt.13N/A10.02CIR216View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch18_Dt.13N/A10.62CIR216View
5TM-1 x 3-79, RIL (2012)AD_ch18_Dt.13N/A102.99CIR216View
6Yumian-1 x T586, RIL (2006)AD_ch18_Dt.13N/A96.8CIR216View
7Li2 x DP5690, F2 (2011)AD_ch18_Dt.13N/A2.43CIR216View
8H18 x 3-79, F2 (2005)AD_ch18_Dt.13N/A173.1CIR216View
9Yumian-1 x T586, RIL (2015)AD_ch18_Dt.13N/A78.3CIR216View
10Yumian-1 x 7235, RIL (2015)AD_ch18_Dt.13N/A46.8CIR216View
11TM-1 x 3-79, RIL (2014)AD_ch18_Dt.13N/A108CIR216View
12GX1135 x GX100-2, F2 (2013)AD_ch18_Dt.13N/A89.8CIR216View
13HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch18_Dt.13N/A5CIR216-137View
14AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A84cir0216View
15Yumian-1 x T586, RIL (2009)AD_ch18_Dt.13N/A0CIR216/150t(C18)View
16GB713 x Nem-X, F2 (2011)AD_ch18_Dt.13N/A81.2CIR216_141View
17CCRI-35 x Yumian-1, RIL (2017)AD_ch18_Dt.13N/A104.7CIR216View
18TM-1 x 3-79, RIL (2012.v3)AD_ch18_Dt.13N/A107.98CIR216View
Sequence
>CIR0216 ID=CIR0216; Name=CIR0216; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
ATCTGAACCATCATCCTCAAATGCCTGCACACACACACACACACAAAAAA
AAACAAGAAAAAAGAGAAAGTCCCAATTAGTTAAGGGATTATCAATCAAG
TTCTGCAACTGTATGAGTGAAGGAAAGTGCCAATCAGAA