CIR0213, CIR0213 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0213
AliasCIR213
Genbank IDAJ567159
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567159
Source Typegenomic
Repeat Motif(T)13(TG)10
PCR ConditionAnnealing temperature: 55
Primer 1CIR213_F: TCAAGTGCATCAAGAAAC
Primer 2CIR213_R: CACTCCTAACAATGGAAA
Product Length234
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567159
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:27083055..27083283 -
A01chromosomeA01:40087268..40087502 -
CM018202.1chromosomeCM018202.1:40348529..40348764 +
CM018215.1chromosomeCM018215.1:25785795..25786023 -
D5_01chromosomeD5_01:24570419..24570646 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:29722630..29722863 +
D10_01chromosomeD10_01:35585971..35586199 +
CM016614.1chromosomeCM016614.1:55295818..55296049 -
Dt_chr2chromosomeDt_chr2:32657857..32658085 +
At_chr9chromosomeAt_chr9:85706390..85706624 -
scaffold103_A01supercontigscaffold103_A01:22749..22983 +
D01chromosomeD01:25226145..25226373 -
Ghir_A01chromosomeGhir_A01:42885473..42885705 +
Ghir_D01chromosomeGhir_D01:26370880..26371108 -
A01chromosomeA01:42309568..42309802 +
D01chromosomeD01:25792465..25792693 -
A01chromosomeA01:42524834..42525066 +
D01chromosomeD01:25982641..25982869 -
A01chromosomeA01:42181848..42182082 +
D01chromosomeD01:26229888..26230116 -
Dt01chromosomeDt01:27360309..27360537 -
scaffold4090supercontigscaffold4090:87892..88127 +
scaffold4090supercontigscaffold4090:89472..89707 +
scaffold11688supercontigscaffold11688:418687..418915 -
Gbar_A01chromosomeGbar_A01:40653940..40654173 +
Gbar_D01chromosomeGbar_D01:26383719..26383947 -
A01chromosomeA01:40607083..40607318 +
D01chromosomeD01:26069270..26069498 -
CM017610.1chromosomeCM017610.1:42604316..42604550 +
CM017623.1chromosomeCM017623.1:26111427..26111655 -
CM017636.1chromosomeCM017636.1:44193752..44193985 +
CM017649.1chromosomeCM017649.1:27469042..27469269 -
CM017688.1chromosomeCM017688.1:40754509..40754745 +
CM017701.1chromosomeCM017701.1:26079444..26079672 -
A01chromosomeA01:43614178..43614412 +
D01chromosomeD01:26736327..26736555 -
Chr01chromosomeChr01:30188491..30188723 -
Chr01chromosomeChr01:19800470..19800697 -
Chr02chromosomeChr02:25468728..25468954 -
chr02chromosomechr02:20946519..20946745 -
Chr_02chromosomeChr_02:18378960..18379278 -
Chr02chromosomeChr02:25175865..25176091 -
Chr02chromosomeChr02:21398511..21398819 -
Chr02chromosomeChr02:19778051..19778278 -
E01chromosomeE01:42766839..42767069 -
F01chromosomeF01:80312828..80313061 +
Chr01chromosomeChr01:110145099..110145329 -
Chr02chromosomeCIR0213:1..258 .
Chr02:26336413..26336664 -
Chr3chromosomeCIR0213:1..258 .
Chr3:20925135..20925386 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567159AJ567159Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A43.3CIR213View
2Yumian-1 x T586, RIL (2015)AD_ch01_At.01N/A49CIR213View
3Yumian-1 x 7235, RIL (2015)AD_ch01_At.01N/A46.9CIR213View
4CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A128.1CIR213View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A34.6CIR213View
Sequence
>CIR0213 ID=CIR0213; Name=CIR0213; organism=Gossypium hirsutum; type=genetic_marker; length=234bp
TCAAGTGCATCAAGAAACCTTTTCATAATGGAGGTAGATTTACAGAGAAT
CATGTTGATATTTAGAGCATAAGTTGGTAAAAATTTGTAAAAGCATGAAT
ACATGTGGACCTTCATGCTAGAACCTTTTTTTTTTTTTGTGTGTGTGTGT
GTGTGTGAATCAAAAGCAAGCTGATAGTTTCTTTATCTAAATTCCTAGTG
TATATTCTTACTTGATTTTCCATTGTTAGGAGTG