CIR0209, CIR0209 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0209
AliasCIR209
Genbank IDAJ567155
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567155
Source Typegenomic
Repeat Motif(TG)22
PCR ConditionAnnealing temperature: 55
Primer 1CIR209_F: TGCATGGATTCCTTATT
Primer 2CIR209_R: TTCCAGTCAAACCAAAC
Product Length152
PolymorphismP_ CIR0209
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567155
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567155AJ567155Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch08_At.08N/A171.6CIR209View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch08_At.08N/A116.84CIR209View
3TM-1 x 3-79, RIL (2012)AD_ch08_At.08N/A56.05CIR209View
4Emian-22 x 3-79, BC1 (2011)AD_ch08_At.08N/A102.59CIR209View
5Yumian-1 x T586, RIL (2015)AD_ch08_At.08N/A65.7CIR209View
6TM-1 x 3-79, RIL (2014)AD_ch08_At.08N/A66.5CIR209View
7Handan-208 x Pima-90, F2:3 (2007)AD_ch08_At.08N/A206.7CIR209*View
8AD-genome wide Reference Map (2009)AD_ch08_At.08N/A133cir0209View
9TM-1 x 3-79, RIL (2012.v3)AD_ch08_At.08N/A66.48CIR209View
Sequence
>CIR0209 ID=CIR0209; Name=CIR0209; organism=Gossypium hirsutum; type=genetic_marker; length=152bp
TGCATGGATTCCTTATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTAGAAGCAAGAATTTCCAATATCATCGAAAAACTTCTAT
AAGATATTGGATTTTTGGGTTTTAAAGTTAAATACGTTTGGTTTGACTGG
AA