CIR0208, CIR0208 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0208
AliasCIR208
Genbank IDAJ567154
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567154
Source Typegenomic
Repeat Motif(GT)9
PCR ConditionAnnealing temperature: 51
Primer 1CIR208_F: GGATAATAAACAAGTGAACC
Primer 2CIR208_R: GTATATGGGATGTGAATGA
Product Length118
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567154
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:53518588..53518705 +
A07chromosomeA07:89280522..89280639 +
CM018221.1chromosomeCM018221.1:51528405..51528522 +
CM018208.1chromosomeCM018208.1:89218764..89218881 +
D5_07chromosomeD5_07:46922765..46922886 +
KI_07chromosomeKI_07:2893725..2893842 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:92600627..92600744 +
D10_07chromosomeD10_07:4543671..4543794 -
CM016620.1chromosomeCM016620.1:6990928..6991067 -
scaffold56.1supercontigscaffold56.1:745474..745591 +
At_chr7chromosomeAt_chr7:30322426..30322549 -
D07chromosomeD07:50681103..50681220 +
A07chromosomeA07:73741902..73742019 +
scaffold64172supercontigscaffold64172:453..570 -
Ghir_D07chromosomeGhir_D07:54773659..54773777 +
Ghir_A07chromosomeGhir_A07:93092701..93092818 +
D07chromosomeD07:54002734..54002851 +
A07chromosomeA07:92101093..92101210 +
D07chromosomeD07:54314346..54314463 +
A07chromosomeA07:92075681..92075804 +
D07chromosomeD07:50785974..50786091 +
A07chromosomeA07:88587504..88587621 +
Dt07chromosomeDt07:55845280..55845397 +
At07chromosomeAt07:82021394..82021511 +
scaffold1819supercontigscaffold1819:548..665 +
scaffold10365supercontigscaffold10365:82278..82395 +
scaffold13267supercontigscaffold13267:170599..170716 -
Gbar_D07chromosomeGbar_D07:51957182..51957299 +
Gbar_A07chromosomeGbar_A07:88328422..88328539 +
D07chromosomeD07:52642100..52642217 +
A07chromosomeA07:90532882..90532999 +
CM017629.1chromosomeCM017629.1:52440577..52440694 +
CM017616.1chromosomeCM017616.1:92165855..92165972 +
CM017655.1chromosomeCM017655.1:53474545..53474662 +
CM017642.1chromosomeCM017642.1:95137188..95137303 +
CM017707.1chromosomeCM017707.1:52590635..52590752 +
CM017694.1chromosomeCM017694.1:90500800..90500917 +
D07chromosomeD07:54866596..54866713 +
A07chromosomeA07:94160656..94160773 +
Chr07chromosomeChr07:95881418..95881535 +
Chr07chromosomeChr07:97288616..97288733 +
Chr07chromosomeChr07:4551574..4551695 -
B_07chromosomeB_07:78175327..78175442 +
Chr01chromosomeChr01:51429058..51429175 +
chr01chromosomechr01:39416193..39416318 +
Chr_01chromosomeChr_01:34134453..34134580 +
Chr01chromosomeChr01:51104339..51104454 +
Chr01chromosomeChr01:36092765..36092886 +
Chr01chromosomeChr01:28390180..28390291 +
Chr01chromosomeChr01:35225334..35225455 +
E07chromosomeE07:6664006..6664115 -
F07chromosomeF07:78076127..78076246 +
Chr07chromosomeChr07:153491842..153491997 +
Chr01chromosomeCIR0208:1..180 .
Chr01:47524154..47524337 +
Chr1chromosomeCIR0208:1..180 .
Chr1:5299168..5299351 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567154AJ567154Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch07_At.07N/A66.7CIR208View
2Yumian-1 x T586, RIL (2015)AD_ch07_At.07N/A139.8CIR208View
3W10 x TM-1, F2:3 (2015)AD_ch07_At.07N/A22.3CIR208View
4Yumian-1 x T586, RIL (2009)AD_ch07_At.07N/A69.5CIR208/180t(C3)View
Sequence
>CIR0208 ID=CIR0208; Name=CIR0208; organism=Gossypium hirsutum; type=genetic_marker; length=118bp
GGATAATAAACAAGTGAACCATTTTCTTACCTAATTCGCTTCCAATAAAA
TCAGCAATGTAAACACACACACACACACACCTGCTTTTGACTTTTGAAGT
CATTCACATCCCATATAC