CIR0176, CIR0176 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0176
AliasCIR176
Genbank IDAJ567123
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567123
Source Typegenomic
Repeat Motif(CA)9
PCR ConditionAnnealing temperature: 55
Primer 1CIR176_F: TTTACCTCACAAGACTCTCA
Primer 2CIR176_R: ATTTGAGCAATGAACACTAC
Product Length123
PolymorphismP_ CIR0176
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567123
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:8768345..8768468 +
CM018206.1chromosomeCM018206.1:8529274..8529397 +
D5_05chromosomeD5_05:7101798..7101935 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:8650034..8650153 +
D10_05chromosomeD10_05:53431692..53431833 -
At_chr9chromosomeAt_chr9:53406962..53407085 -
D05chromosomeD05:7735526..7735649 +
A05chromosomeA05:8056695..8056818 +
scaffold177443supercontigscaffold177443:110..233 -
Ghir_A05chromosomeGhir_A05:8739864..8739987 +
Ghir_D05chromosomeGhir_D05:7777812..7777916 -
A05chromosomeA05:8519355..8519478 +
A05chromosomeA05:8761651..8761774 +
A05chromosomeA05:9143427..9143550 +
scaffold17003supercontigscaffold17003:58971..59094 -
scaffold11071supercontigscaffold11071:155098..155187 -
Gbar_A05chromosomeGbar_A05:8239973..8240096 +
A05chromosomeA05:8824313..8824436 +
CM017614.1chromosomeCM017614.1:8658422..8658545 +
CM017640.1chromosomeCM017640.1:8786828..8786953 +
CM017692.1chromosomeCM017692.1:8546869..8546992 +
A05chromosomeA05:8918800..8918923 +
Chr05chromosomeChr05:9311205..9311328 +
Chr05chromosomeChr05:8528709..8528828 +
Chr05chromosomeChr05:7135233..7135368 +
Chr09chromosomeChr09:7314585..7314708 +
Chr_09chromosomeChr_09:6849219..6849340 +
Chr09chromosomeChr09:7607611..7607738 +
Chr09chromosomeChr09:5629196..5629319 +
Chr09chromosomeChr09:6645785..6645902 +
E05chromosomeE05:9205107..9205254 +
F05chromosomeF05:7488843..7488965 +
Chr13chromosomeChr13:190063172..190063303 -
Chr09chromosomeCIR0176:1..150 .
Chr09:7088032..7088193 +
Chr9chromosomeCIR0176:1..150 .
Chr9:12012425..12012586 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567123AJ567123Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A66.8CIR176View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A52.39CIR176View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch19_Dt.05N/A18.24CIR176View
4TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A44.53CIR176View
5TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A140.7CIR176View
6AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A79cir0176View
7TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A140.74CIR176View
8PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A64CIR176View
Sequence
>CIR0176 ID=CIR0176; Name=CIR0176; organism=Gossypium hirsutum; type=genetic_marker; length=123bp
TTTACCTCACAAGACTCTCATCACACACACACACACACATATACACATAT
ATATTGTCTTTTCTTGTGTTATGCATGCTACTTATACCTGTATCAATATC
CCAGTAGTGTTCATTGCTCAAAT