CIR0171, CIR0171 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0171
AliasCIR171
Genbank IDAJ567118
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567118
Source Typegenomic
Repeat Motif(TG)16(AG)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR171_F: GAAATCCAAATCCAACC
Primer 2CIR171_R: AACCACCCGACTCTTT
Product Length206
PolymorphismP_ CIR0171
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567118
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567118AJ567118Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch10_At.10N/A28.3CIR171View
2Emian-22 x 3-79, BC1 (2011)AD_ch10_At.10N/A111.04CIR171View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch10_At.10N/A11.47CIR171View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch20_Dt.10N/A57.32CIR171View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch10_At.10N/A60.18CIR171View
6Guazuncho-2 x VH8-4602, consensus (2009)AD_ch20_Dt.10N/A96.18CIR171View
7SG 747 x Giza 75, BIL (2013)AD_ch10_At.10N/A17.8CIR171View
8Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch10_At.10N/A54.6CIR171aView
9Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch20_Dt.10N/A161CIR171bView
10HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch10_At.10N/A0CIR171-211View
11AD-genome wide Reference Map (2009)AD_ch10_At.10N/A35cir0171View
12AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A82cir0171View
13PD 94042 x (AD)4-08, F2 (2016)AD_ch10_At.10N/A63.7CIR171View
Sequence
>CIR0171 ID=CIR0171; Name=CIR0171; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
GAAATCCAAATCCAACCATTTATATGATTTATCTAATCCCCATACCTTTC
AGTTTTTTTCTTCATATATAATATAGAAAAAGCGAAACAAAAAAGGAAAC
TAATAGAAAAGAGATTGGAGTGTGAGTTTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGAGAGAGAGAGAGTTATAAAAATGTTTGGCCAAAGAGTCGG
GTGGTT