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Marker Overview
Name | CIR0171 |
Alias | CIR171
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Genbank ID | AJ567118 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567118
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Source Type | genomic |
Repeat Motif | (TG)16(AG)6 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR171_F: GAAATCCAAATCCAACC |
Primer 2 | CIR171_R: AACCACCCGACTCTTT |
Product Length | 206 |
Polymorphism | P_ CIR0171 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch10_At.10 | N/A | 28.3 | CIR171 | View |
2 | Emian-22 x 3-79, BC1 (2011) | AD_ch10_At.10 | N/A | 111.04 | CIR171 | View |
3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch10_At.10 | N/A | 11.47 | CIR171 | View |
4 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch20_Dt.10 | N/A | 57.32 | CIR171 | View |
5 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch10_At.10 | N/A | 60.18 | CIR171 | View |
6 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch20_Dt.10 | N/A | 96.18 | CIR171 | View |
7 | SG 747 x Giza 75, BIL (2013) | AD_ch10_At.10 | N/A | 17.8 | CIR171 | View |
8 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch10_At.10 | N/A | 54.6 | CIR171a | View |
9 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch20_Dt.10 | N/A | 161 | CIR171b | View |
10 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch10_At.10 | N/A | 0 | CIR171-211 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch10_At.10 | N/A | 35 | cir0171 | View |
12 | AD-genome wide Reference Map (2009) | AD_ch20_Dt.10 | N/A | 82 | cir0171 | View |
13 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch10_At.10 | N/A | 63.7 | CIR171 | View |
Sequence
>CIR0171 ID=CIR0171; Name=CIR0171; organism=Gossypium hirsutum; type=genetic_marker; length=206bp GAAATCCAAATCCAACCATTTATATGATTTATCTAATCCCCATACCTTTC AGTTTTTTTCTTCATATATAATATAGAAAAAGCGAAACAAAAAAGGAAAC TAATAGAAAAGAGATTGGAGTGTGAGTTTGTGTGTGTGTGTGTGTGTGTG TGTGTGTGTGAGAGAGAGAGAGTTATAAAAATGTTTGGCCAAAGAGTCGG GTGGTT
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