CIR0143, CIR0143 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0143
AliasCIR143
Genbank IDAJ567091
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567091
Source Typegenomic
Repeat Motif(AC)7(TA)5
PCR ConditionAnnealing temperature: 55
Primer 1CIR143_F: AAGAAAGAAGAAACTTCCC
Primer 2CIR143_R: GCCATTAAGAAGGACAAA
Product Length124
PolymorphismP_ CIR0143
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567091
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:52212650..52212773 +
CM018215.1chromosomeCM018215.1:51049855..51049976 +
D5_01chromosomeD5_01:45622107..45622218 +
D10_07chromosomeD10_07:21406340..21406471 -
CM016614.1chromosomeCM016614.1:115091253..115091370 +
D01chromosomeD01:49417249..49417372 +
Ghir_D01chromosomeGhir_D01:51213766..51213889 +
Ghir_A12chromosomeGhir_A12:69661112..69661222 +
Ghir_A12chromosomeGhir_A12:34343948..34344058 -
Ghir_A01chromosomeGhir_A01:93754587..93754698 -
D01chromosomeD01:53015998..53016121 +
D01chromosomeD01:52599022..52599145 +
D01chromosomeD01:50139499..50139622 +
scaffold19292supercontigscaffold19292:70030..70141 +
scaffold19292supercontigscaffold19292:67841..67952 +
scaffold1831supercontigscaffold1831:27954..28064 +
scaffold2272supercontigscaffold2272:50592..50713 -
Gbar_D01chromosomeGbar_D01:51288622..51288743 +
Gbar_A12chromosomeGbar_A12:64660895..64661005 +
Gbar_A01chromosomeGbar_A01:92524930..92525041 -
D01chromosomeD01:51958097..51958218 +
CM017623.1chromosomeCM017623.1:52272835..52272956 +
CM017649.1chromosomeCM017649.1:53448629..53448752 +
CM017701.1chromosomeCM017701.1:51531898..51532019 +
D01chromosomeD01:53081339..53081462 +
Chr01chromosomeChr01:41114599..41114710 +
B_11chromosomeB_11:25366101..25366238 -
Chr02chromosomeChr02:49396080..49396193 +
chr02chromosomechr02:37941609..37941720 +
Chr02chromosomeChr02:50209483..50209594 +
Chr02chromosomeChr02:36868389..36868502 +
Chr02chromosomeChr02:35457153..35457266 +
Chr02chromosomeCIR0143:1..268 .
Chr02:51443337..51443592 +
Chr2chromosomeCIR0143:1..268 .
Chr2:11894106..11894361 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567091AJ567091Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch15_Dt.01N/A66.1CIR143bView
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch26_Dt.12N/A132.1CIR143aView
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch15_Dt.01N/A60.73CIR143View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch26_Dt.12N/A84.16CIR143View
5AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A53cir0143View
6AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A68cir0143View
7TM-1 x Hai-7124, BC1 (2008)AD_ch26_Dt.12N/A55.91CIR143-250View
8TM-1 x Hai-7124, BC1 (2007)AD_ch26_Dt.12N/A52.9CIR143-250View
9TM-1 x Hai-7124, BC1 (2012)AD_ch26_Dt.12N/A53CIR143-250View
Sequence
>CIR0143 ID=CIR0143; Name=CIR0143; organism=Gossypium hirsutum; type=genetic_marker; length=124bp
AAGAAAGAAGAAACTTCCCCACGAATCTTTCTTACACACACACACACATA
TATATATAACCAATTTCCTCATAATGGAACTTAACAATTGTCACTTGAAT
CAAGAATTTGTCCTTCTTAATGGC