CIR0135, CIR0135 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0135
AliasCIR135
Genbank IDAJ567083
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567083
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR135_F: AAGCAAAGCAAACAAAG
Primer 2CIR135_R: GCTTGCCAGTATGATGT
Product Length250
PolymorphismP_ CIR0135
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567083
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:6084175..6084508 +
A13chromosomeA13:6933904..6934153 +
CM018227.1chromosomeCM018227.1:5508194..5508521 +
CM018214.1chromosomeCM018214.1:6368666..6368913 +
D5_13chromosomeD5_13:5218000..5218326 +
KI_13chromosomeKI_13:3554533..3554859 +
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:6811097..6811344 +
D10_13chromosomeD10_13:5286214..5286537 +
Dt_chr13chromosomeDt_chr13:52897216..52897549 -
D13chromosomeD13:5627151..5627484 +
A13chromosomeA13:6000452..6000701 +
scaffold24900supercontigscaffold24900:378..711 -
Ghir_D13chromosomeGhir_D13:5643043..5643376 +
Ghir_A13chromosomeGhir_A13:6428558..6428807 +
D13chromosomeD13:5570894..5571227 +
A13chromosomeA13:6350497..6350746 +
D13chromosomeD13:5861641..5861974 +
A13chromosomeA13:6394275..6394524 +
D13chromosomeD13:5517265..5517600 +
A13chromosomeA13:6449623..6449872 +
At13chromosomeAt13:6338743..6338990 +
scaffold21811supercontigscaffold21811:34274..34521 +
scaffold1442supercontigscaffold1442:45624..45951 -
Scaffold3600supercontigScaffold3600:42437..42684 +
Gbar_D13chromosomeGbar_D13:5257666..5257993 +
D13chromosomeD13:5256488..5256815 +
A13chromosomeA13:6319147..6319394 +
CM017635.1chromosomeCM017635.1:5544860..5545187 +
CM017622.1chromosomeCM017622.1:6578099..6578348 +
CM017661.1chromosomeCM017661.1:5929616..5929949 +
CM017648.1chromosomeCM017648.1:6688734..6688981 +
CM017713.1chromosomeCM017713.1:5502747..5503074 +
CM017700.1chromosomeCM017700.1:6265266..6265513 +
D13chromosomeD13:6005587..6005920 +
A13chromosomeA13:6745180..6745429 +
Chr13chromosomeChr13:6809863..6810110 +
Chr13chromosomeChr13:6242196..6242443 -
Chr13chromosomeChr13:5230736..5231063 +
B_13chromosomeB_13:88467661..88468156 -
Chr13chromosomeChr13:5594635..5594964 +
chr13chromosomechr13:4975268..4975613 +
Chr_13chromosomeChr_13:5398636..5398969 +
Chr13chromosomeChr13:5833100..5833432 +
Chr13chromosomeChr13:5440523..5441046 +
Chr13chromosomeChr13:5453345..5453970 +
E13chromosomeE13:7894867..7895144 +
F13chromosomeF13:5891070..5891318 +
Chr13chromosomeCIR0135:1..379 .
Chr13:5173858..5174314 +
Chr13chromosomeCIR0135:1..379 .
Chr13:37887606..37888062 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567083AJ567083Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A104.01CIR135View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A162.1CIR135View
3DH962 x Jinmian-6, F2 (2009)AD_ch13_At.13N/A99CIR135View
4DH962 x Jinmian-6, F2 (2009)AD_ch13_At.13N/A99CIR135View
5DH962 X Ji Mian 5, F2 (2015)AD_ch13_At.13N/A22.81CIR135View
6DH962 x Ji Mian 5, RIL (2015)AD_ch13_At.13N/A3.2CIR135View
7AD-genome wide Reference Map (2009)AD_ch13_At.13N/A154cir0135View
Sequence
>CIR0135 ID=CIR0135; Name=CIR0135; organism=Gossypium hirsutum; type=genetic_marker; length=250bp
AAGCAAAGCAAACAAAGGTCAAAATATGCCTCCAGTCCAAGCCTTGAGAT
TTAGTCTCTATATTTAAAAAATTATATCCTCTTACTACTTTGGTTTAGAA
ATCCTAGCCCAATCATTGACACCGTTAGTATTTTCCATCAATACACCTAG
GTAATCATACCAACTTCAAAAGCAAACCATGATGAACAATACAAGACTTA
ACAATACACACACACACACACTTACATCAGGAAACATCATACTGGCAAGC