CIR0107, CIR0107 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0107
AliasCIR107
Genbank IDAJ567056
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567056
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR107_F: AATCACTATCCTCCTCCC
Primer 2CIR107_R: TGGATTGCTTCTTCTTCT
Product Length136
PolymorphismP_ CIR0107
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567056
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:9445288..9445423 -
A07chromosomeA07:10355662..10355795 -
CM018221.1chromosomeCM018221.1:8936394..8936526 -
D10_07chromosomeD10_07:45086348..45086486 +
CM016620.1chromosomeCM016620.1:102239877..102240006 +
Dt_chr1chromosomeDt_chr1:44850864..44850999 +
D07chromosomeD07:9055586..9055721 -
A07chromosomeA07:9693572..9693706 -
Ghir_D07chromosomeGhir_D07:9310971..9311106 -
Ghir_A07chromosomeGhir_A07:10658644..10658778 -
D07chromosomeD07:8904054..8904189 -
A07chromosomeA07:10119541..10119675 -
D07chromosomeD07:9248255..9248390 -
D07chromosomeD07:9138061..9138196 -
A07chromosomeA07:10695853..10695987 -
scaffold9529supercontigscaffold9529:47189..47324 +
Gbar_D07chromosomeGbar_D07:9302488..9302620 -
Gbar_A07chromosomeGbar_A07:10705403..10705536 -
D07chromosomeD07:9077080..9077212 -
CM017629.1chromosomeCM017629.1:9401642..9401775 -
CM017642.1chromosomeCM017642.1:10725464..10725601 -
CM017707.1chromosomeCM017707.1:9236345..9236478 -
CM017694.1chromosomeCM017694.1:10600978..10601114 -
D07chromosomeD07:9394998..9395133 -
A07chromosomeA07:10723952..10724085 -
Chr07chromosomeChr07:11011271..11011407 -
B_05chromosomeB_05:65099517..65099650 +
Chr01chromosomeChr01:9092422..9092554 -
chr01chromosomechr01:8266983..8267125 -
Chr_01chromosomeChr_01:8337210..8337348 -
Chr01chromosomeChr01:9000621..9000757 -
Chr01chromosomeChr01:7500280..7500416 -
Chr01chromosomeChr01:6245951..6246091 -
Chr01chromosomeChr01:7677800..7677937 -
E07chromosomeE07:80778006..80778141 +
F07chromosomeF07:9935185..9935321 -
Chr01chromosomeCIR0107:1..249 .
Chr01:8839465..8839721 -
Chr9chromosomeCIR0107:1..249 .
Chr9:39956057..39956313 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567056AJ567056Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A80.61CIR107View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A165.6CIR107View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch16_Dt.07N/A41.89CIR107View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch16_Dt.07N/A105.4CIR107View
5CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A78.2CIR107View
6Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A89.55CIR107View
7TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A43.12CIR107View
8TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A82.4CIR107View
9AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A57cir0107View
10TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A82.39CIR107View
Sequence
>CIR0107 ID=CIR0107; Name=CIR0107; organism=Gossypium hirsutum; type=genetic_marker; length=136bp
AATCACTATCCTCCTCCCCCATTTAATAATATTTGTAGCCATCCATCAAA
ATAATAACAATAGGTAATTGTTTTGCCTTCACAGAAATAACATTAATAAC
ACACACACACACACAAAAAGAAGAAGAAGCAATCCA