CIR0102, CIR0102 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0102
AliasCIR102
Genbank IDAJ567051
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567051
Source Typegenomic
Repeat Motif(GT)12(N)4(GA)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR102_F: TAACAACTGGATGAGATGA
Primer 2CIR102_R: CATAACTGCAAAGGAGAA
Product Length163
PolymorphismP_ CIR0102
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567051
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Gbar_D05chromosomeGbar_D05:1933727..1933879 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567051AJ567051Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A28.5CIR102View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A27.7CIR102View
3AD-genome wide Reference Map (2009)AD_ch05_At.05N/A31cir0102View
4PD 94042 x (AD)4-08, F2 (2016)AD_ch05_At.05N/A12.3CIR102View
Sequence
>CIR0102 ID=CIR0102; Name=CIR0102; organism=Gossypium hirsutum; type=genetic_marker; length=163bp
TAACAACTGGATGAGATGATATATAATGATTTTGTCTTTTTCCTGAATTC
TTTCTGTGGTGGCTTTATCTGGTGTGTGTGTGTGTGTGTGTGTGTTTAAA
GAGAGAGAGAGACAGATATCCTTTTTTTCCCAAGGGAGTTAATCCTTCTC
CTTTGCAGTTATG