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Marker Overview
Name | CIR0100 |
Alias | CIR100
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Genbank ID | AJ567049 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ567049
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Source Type | genomic |
Repeat Motif | (GT)7 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR100_F: GAGAGGCGATGCTAAA |
Primer 2 | CIR100_R: GGGATACAAATGGAGAAA |
Product Length | 113 |
Polymorphism | P_ CIR0100 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch16_Dt.07 | N/A | 68.5 | CIR100 | View |
2 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch16_Dt.07 | N/A | 147.9 | CIR100 | View |
3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch16_Dt.07 | N/A | 35.77 | CIR100 | View |
4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch16_Dt.07 | N/A | 80.31 | CIR100 | View |
5 | TM-1 x 3-79, RIL (2012) | AD_ch16_Dt.07 | N/A | 51.97 | CIR100 | View |
6 | TM-1 x 3-79, RIL (2014) | AD_ch16_Dt.07 | N/A | 73.4 | CIR100 | View |
7 | SG 747 x Giza 75, BIL (2013) | AD_ch16_Dt.07 | N/A | 56.5 | CIR100 | View |
8 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch16_Dt.07 | N/A | 95 | CIR100a | View |
9 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch16_Dt.07 | N/A | 95 | CIR100b | View |
10 | HS-46 x MARCABUCAG8US-1-88, RIL (2009) | AD_ch16_Dt.07 | N/A | 42 | CIR100-109 | View |
11 | AD-genome wide Reference Map (2009) | AD_ch16_Dt.07 | N/A | 79 | cir0100 | View |
12 | LMY22 x LY343, RIL (2016) | chr.16 | N/A | 100 | cir0100 | View |
13 | TM-1 x Hai-7124, BC1 (2007) | AD_ch16_Dt.07 | N/A | 67.6 | CIR100-110 | View |
14 | TM-1 x Hai-7124, BC1 (2008) | AD_ch16_Dt.07 | N/A | 64.14 | CIR100-110 | View |
15 | H16 x T586, F2 (2009) | AD_ch16_Dt.07 | N/A | 64.1 | CIR100-110 | View |
16 | TM-1 x Hai-7124, BC1 (2012) | AD_ch16_Dt.07 | N/A | 67.5 | CIR100-110 | View |
17 | TM-1 x 3-79, RIL (2012.v3) | AD_ch16_Dt.07 | N/A | 73.4 | CIR100 | View |
Sequence
>CIR0100 ID=CIR0100; Name=CIR0100; organism=Gossypium hirsutum; type=genetic_marker; length=113bp GAGAGGCGATGCTAAAACTCTGGGTTTGTATGTGACCTTAACTCATATCC TCATAATATCCCATATATATGTGTGTGTGTGTGTTTGACTTTGGGTTTCT CCATTTGTATCCC
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