CIR0100, CIR0100 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0100
AliasCIR100
Genbank IDAJ567049
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567049
Source Typegenomic
Repeat Motif(GT)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR100_F: GAGAGGCGATGCTAAA
Primer 2CIR100_R: GGGATACAAATGGAGAAA
Product Length113
PolymorphismP_ CIR0100
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567049
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:13692074..13692185 -
A07chromosomeA07:16775640..16775747 -
CM018221.1chromosomeCM018221.1:13028886..13028995 -
CM018208.1chromosomeCM018208.1:16746232..16746339 -
D5_07chromosomeD5_07:12873189..12873300 -
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:15466795..15466902 -
D10_07chromosomeD10_07:41295229..41295342 +
CM016620.1chromosomeCM016620.1:93240634..93240755 +
scaffold2094.1supercontigscaffold2094.1:7593..7700 +
Dt_chr2chromosomeDt_chr2:5941133..5941244 +
D07chromosomeD07:13060561..13060672 -
A07chromosomeA07:16007006..16007113 -
Ghir_D07chromosomeGhir_D07:13481295..13481406 -
Ghir_A07chromosomeGhir_A07:17116117..17116224 -
D07chromosomeD07:12871246..12871357 -
A07chromosomeA07:16370194..16370301 -
D07chromosomeD07:13449450..13449561 -
A07chromosomeA07:17127120..17127227 -
D07chromosomeD07:13328305..13328416 -
A07chromosomeA07:17102106..17102213 -
Dt07chromosomeDt07:14885245..14885354 -
scaffold6944supercontigscaffold6944:2012..2121 +
scaffold4607supercontigscaffold4607:85045..85154 -
Gbar_D07chromosomeGbar_D07:13463138..13463247 -
Gbar_A07chromosomeGbar_A07:16699232..16699339 -
D07chromosomeD07:13150711..13150820 -
A07chromosomeA07:16742601..16742708 -
CM017629.1chromosomeCM017629.1:13447188..13447299 -
CM017616.1chromosomeCM017616.1:16661554..16661661 -
CM017655.1chromosomeCM017655.1:13670235..13670346 -
CM017642.1chromosomeCM017642.1:16701602..16701709 -
CM017707.1chromosomeCM017707.1:13315396..13315507 -
CM017694.1chromosomeCM017694.1:17005491..17005598 -
D07chromosomeD07:13654925..13655036 -
A07chromosomeA07:17257438..17257545 -
Chr07chromosomeChr07:17914422..17914529 -
Chr07chromosomeChr07:18155933..18156040 -
Chr07chromosomeChr07:40705993..40706104 +
B_07chromosomeB_07:17329745..17329866 -
Chr01chromosomeChr01:13268733..13268844 -
chr01chromosomechr01:11294833..11294950 -
Chr_01chromosomeChr_01:10981616..10981729 -
Chr01chromosomeChr01:10741477..10741590 -
Chr01chromosomeChr01:8612908..8613019 -
Chr01chromosomeChr01:10586495..10586608 -
E07chromosomeE07:74543392..74543503 +
F07chromosomeF07:15506052..15506159 -
Chr07chromosomeChr07:29564760..29564885 -
Chr01chromosomeCIR0100:1..207 .
Chr01:12757147..12757352 -
scaffold454supercontigCIR0100:1..207 .
scaffold454:81314..81519 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567049AJ567049Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A68.5CIR100View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A147.9CIR100View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch16_Dt.07N/A35.77CIR100View
4Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A80.31CIR100View
5TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A51.97CIR100View
6TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A73.4CIR100View
7SG 747 x Giza 75, BIL (2013)AD_ch16_Dt.07N/A56.5CIR100View
8Handan-208 x Pima-90, F2:3 (2007)AD_ch16_Dt.07N/A95CIR100aView
9Handan-208 x Pima-90, F2:3 (2007)AD_ch16_Dt.07N/A95CIR100bView
10HS-46 x MARCABUCAG8US-1-88, RIL (2009)AD_ch16_Dt.07N/A42CIR100-109View
11AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A79cir0100View
12LMY22 x LY343, RIL (2016)chr.16N/A100cir0100View
13TM-1 x Hai-7124, BC1 (2007)AD_ch16_Dt.07N/A67.6CIR100-110View
14TM-1 x Hai-7124, BC1 (2008)AD_ch16_Dt.07N/A64.14CIR100-110View
15H16 x T586, F2 (2009)AD_ch16_Dt.07N/A64.1CIR100-110View
16TM-1 x Hai-7124, BC1 (2012)AD_ch16_Dt.07N/A67.5CIR100-110View
17TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A73.4CIR100View
Sequence
>CIR0100 ID=CIR0100; Name=CIR0100; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
GAGAGGCGATGCTAAAACTCTGGGTTTGTATGTGACCTTAACTCATATCC
TCATAATATCCCATATATATGTGTGTGTGTGTGTTTGACTTTGGGTTTCT
CCATTTGTATCCC