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Marker Overview
| Name | CIR0097 |
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| Alias | CIR97
CIR097
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| Genbank ID | AJ567046 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ567046
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| Source Type | genomic |
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| Repeat Motif | (GT)7(GA)7 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | CIR097_F: ACTGGATGATGAAGCC |
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| Primer 2 | CIR097_R: GACTTTCCCTTTACCTCA |
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| Product Length | 168 |
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| Polymorphism | P_ CIR0097 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Image
| File Name | Legend |
|---|
| 48_FISH_TAG-115-675.jpg | Twenty-six individual cotton mitotic chromosomes with FISH signals derived from the chromosome-speciWc BACs, and comparisons of linkage and FISH maps. [Image from Wang 2007, TAG-115-675] |
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
|---|
| 1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch14_Dt.02 | N/A | 193.1 | CIR097 | View |
| 2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch14_Dt.02 | N/A | 118.96 | CIR097 | View |
| 3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch14_Dt.02 | N/A | 98.88 | CIR097 | View |
| 4 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch14_Dt.02 | N/A | 189.2 | CIR097 | View |
| 5 | SG 747 x Giza 75, BIL (2013) | AD_ch14_Dt.02 | N/A | 42.5 | CIR097 | View |
| 6 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch17_Dt.03 | N/A | 90.8 | CIR097 | View |
| 7 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch14_Dt.02 | N/A | 47.9 | CIR097* | View |
| 8 | AD-genome wide Reference Map (2009) | AD_ch14_Dt.02 | N/A | 214 | cir0097 | View |
| 9 | TM-1 x Hai-7124, BC1 (2007) | AD_ch14_Dt.02 | N/A | 2.7 | CIR097-230 | View |
| 10 | TM-1 x Hai-7124, BC1 (2008) | AD_ch14_Dt.02 | N/A | 4.61 | CIR097-230 | View |
| 11 | TM-1 x Hai-7124, BC1 (2012) | AD_ch14_Dt.02 | N/A | 106.8 | CIR097-230 | View |
| 12 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch14_Dt.02 | N/A | 147.26 | CIR097 | View |
| 13 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch14_Dt.02 | N/A | 17.5 | CIR097 | View |
Sequence
>CIR0097 ID=CIR0097; Name=CIR0097; organism=Gossypium hirsutum; type=genetic_marker; length=168bp
ACTGGATGATGAAGCCAAAATAAATAAATACCTGGAGAAAAAAAAGGGAC
TTGCAGATAAAAAAGATGAAAGCAGTAAAATGTGTAACACAAAAAAATGG
TTTCAAGTGTGTGTGTGTGTGAGAGAGAGAGAGACAGAGAGAGAGAGAGA
TGAGGTAAAGGGAAAGTC
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