CIR0086, CIR0086 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0086
AliasCIR86
CIR086
Genbank IDAJ567035
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567035
Source Typegenomic
Repeat Motif(T)8(N)1(T)6(N)19T)8(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR086_F: ATCTAGGAATCGGAAATG
Primer 2CIR086_R: CTGAAACTGCTTGGCT
Product Length261
PolymorphismP_ CIR0086
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567035
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:25101482..25101719 -
A06chromosomeA06:38748086..38748345 -
CM018220.1chromosomeCM018220.1:23363873..23364110 -
CM018207.1chromosomeCM018207.1:37924845..37925108 -
D5_06chromosomeD5_06:23640819..23641056 -
KI_06chromosomeKI_06:12444777..12445026 -
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:42085329..42085587 -
CM016619.1chromosomeCM016619.1:93084475..93084715 -
Dt_chr10chromosomeDt_chr10:31308890..31309127 -
At_chr10chromosomeAt_chr10:5385128..5385389 -
D06chromosomeD06:23975002..23975239 -
A06chromosomeA06:36670164..36670425 -
Ghir_D06chromosomeGhir_D06:24380173..24380410 -
Ghir_A06chromosomeGhir_A06:40052195..40052456 -
D06chromosomeD06:23744336..23744573 -
A06chromosomeA06:38990346..38990607 -
D06chromosomeD06:24323312..24323549 -
D06chromosomeD06:23889487..23889724 -
A06chromosomeA06:39158846..39159107 -
At06chromosomeAt06:35142474..35142737 -
scaffold3317supercontigscaffold3317:165040..165277 +
scaffold1876supercontigscaffold1876:208278..208541 -
Gbar_D06chromosomeGbar_D06:23548482..23548719 -
Gbar_A06chromosomeGbar_A06:37765427..37765690 -
D06chromosomeD06:23243680..23243917 -
A06chromosomeA06:37960083..37960346 -
CM017628.1chromosomeCM017628.1:24089457..24089694 -
CM017615.1chromosomeCM017615.1:39134306..39134568 -
CM017654.1chromosomeCM017654.1:23748732..23748969 -
CM017641.1chromosomeCM017641.1:40250365..40250623 -
CM017706.1chromosomeCM017706.1:23581904..23582141 -
CM017693.1chromosomeCM017693.1:38584824..38585087 -
D06chromosomeD06:24646854..24647091 -
A06chromosomeA06:40209569..40209828 -
Chr06chromosomeChr06:41696010..41696263 -
Chr06chromosomeChr06:43068102..43068360 -
Chr06chromosomeChr06:23465816..23466053 -
B_06chromosomeB_06:61747367..61747622 +
Chr10chromosomeChr10:23897128..23897365 -
chr10chromosomechr10:20280940..20281177 -
Chr10chromosomeChr10:24973942..24974179 -
Chr10chromosomeChr10:16684289..16684524 -
Chr10chromosomeChr10:14234167..14234404 -
Chr10chromosomeChr10:17347631..17347866 -
E05chromosomeE05:5876922..5877412 +
F06chromosomeF06:37691349..37691615 -
Chr13chromosomeChr13:192699423..192699914 -
Chr06chromosomeChr06:119108503..119108740 -
Chr10chromosomeCIR0086:1..336 .
Chr10:23423505..23423817 -
Chr10chromosomeCIR0086:1..336 .
Chr10:17901901..17902213 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567035AJ567035Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch19_Dt.05N/A38.4CIR086aView
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch19_Dt.05N/A32.17CIR086View
3TM-1 x 3-79, RIL (2012)AD_ch06_At.06N/A58.11CIR086View
4TM-1 x 3-79, RIL (2014)AD_ch06_At.06N/A58.1CIR086View
5AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A42cir0086View
6AD-genome wide Reference Map (2009)AD_ch06_At.06N/A177cir0086View
7TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A95.5CIR086-330View
8TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A61.33CIR086-330View
9TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A59.3CIR086-330View
10TM-1 x 3-79, RIL (2012.v3)AD_ch06_At.06N/A58.11CIR086View
Sequence
>CIR0086 ID=CIR0086; Name=CIR0086; organism=Gossypium hirsutum; type=genetic_marker; length=261bp
ATCTAGGAATCGGAAATGACCAGTGAGTTCCCCAAAATTTCCCATTTTTT
AAAAACAAATTCATCTCTCTTTTTTTTCTTTTTTCTTTTTTTTGTGTGTG
TGTGTGTCAAAAACTGGGTTTATGTTTGTGTTATATTAATGTATAGCTAT
TGTTTGAAAACCTCTTTTTCAGGAACAAAGCAGCCATTGTTAAAGCAGGG
GCAGTGCATAAGATGCTAAAGCTTATAAAGTCCCCTAATGAGCCAAGCCA
AGCAGTTTCAG