CIR0060, CIR0060 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0060
AliasCIR60
CIR060
Genbank IDAJ567009
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567009
Source Typegenomic
Repeat Motif(AC)9(A)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR060_F: CTTGCTTCCTCACCC
Primer 2CIR060_R: GAATGCTACTTTCATCCTAC
Product Length156
PolymorphismP_ CIR0060
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567009
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:14385646..14385801 -
D09chromosomeD09:14416207..14416361 -
A09chromosomeA09:22087944..22088104 -
CM018210.1chromosomeCM018210.1:26182814..26182973 +
CM018223.1chromosomeCM018223.1:13104410..13104563 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:23533756..23533908 -
CM016622.1chromosomeCM016622.1:69077271..69077424 -
At_chr9chromosomeAt_chr9:13096760..13096915 -
At_chr6chromosomeAt_chr6:25732044..25732202 -
scaffold4380_D09supercontigscaffold4380_D09:18923..19078 -
A09chromosomeA09:21543094..21543254 -
Ghir_A09chromosomeGhir_A09:27685440..27685598 +
Ghir_D09chromosomeGhir_D09:14197624..14197777 -
A09chromosomeA09:29686040..29686200 +
D09chromosomeD09:13771099..13771254 -
A09chromosomeA09:29346049..29346207 +
D09chromosomeD09:13829882..13830037 -
A09chromosomeA09:26606148..26606308 +
D09chromosomeD09:13819119..13819274 -
scaffold19378supercontigscaffold19378:1037..1190 +
Gbar_D09chromosomeGbar_D09:14375498..14375651 -
Gbar_A09chromosomeGbar_A09:29872502..29872661 -
A09chromosomeA09:27659656..27659815 +
D09chromosomeD09:15474191..15474344 -
CM017618.1chromosomeCM017618.1:27027738..27027896 +
CM017631.1chromosomeCM017631.1:13321854..13322007 -
CM017657.1chromosomeCM017657.1:13567423..13567584 +
CM017644.1chromosomeCM017644.1:27183504..27183660 +
CM017696.1chromosomeCM017696.1:27455068..27455227 +
CM017709.1chromosomeCM017709.1:13498450..13498606 -
A09chromosomeA09:29638705..29638865 +
D09chromosomeD09:14329453..14329608 -
Chr09chromosomeChr09:23441454..23441620 -
Chr09chromosomeChr09:24584843..24584995 -
Chr09chromosomeChr09:14102382..14102537 +
Chr06chromosomeChr06:13197295..13197447 +
Chr_06chromosomeChr_06:10625455..10625673 +
Chr06chromosomeChr06:14552326..14552480 -
Chr06chromosomeChr06:11711411..11711561 +
Chr06chromosomeChr06:8181641..8181785 +
Chr06chromosomeChr06:10182364..10182598 +
E09chromosomeE09:61590988..61591140 -
F09chromosomeF09:16513283..16513435 +
Chr09chromosomeChr09:43617683..43617834 +
Chr06chromosomeCIR0060:1..210 .
Chr06:14078093..14078313 +
Chr13chromosomeCIR0060:1..210 .
Chr13:30994334..30994555 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567009AJ567009Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch23_Dt.09N/A102.9CIR060View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch23_Dt.09N/A43.02CIR060View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch23_Dt.09N/A23.95CIR060View
4Handan-208 x Pima-90, F2:3 (2007)AD_ch23_Dt.09N/A88.5CIR060View
5Emian-22 x 3-79, BC1 (2011)AD_ch23_Dt.09N/A54.86CIR060View
6AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A57cir0060View
7TM-1 x Hai-7124, BC1 (2007)AD_ch23_Dt.09N/A51.1CIR060-150View
8TM-1 x Hai-7124, BC1 (2008)AD_ch23_Dt.09N/A50.46CIR060-150View
9TM-1 x Hai-7124, BC1 (2012)AD_ch23_Dt.09N/A47.9CIR060-150View
Sequence
>CIR0060 ID=CIR0060; Name=CIR0060; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
CTTGCTTCCTCACCCAGGTTGACCAATTGCTTTTGAAGATTTTGTGATAT
TACACACACACACACACACAAAAAAAACACCTATTACGTATCTTGTAACA
CGAATTACAAATAACAGTCAAAATACGACAAATTTAGTAGGATGAAAGTA
GCATTC