CIR0055, CIR0055 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0055
AliasCIR55
CIR055
Genbank IDAJ567004
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567004
Source Typegenomic
Repeat Motif(AT)8(GT)15
PCR ConditionAnnealing temperature: 55
Primer 1CIR055_F: AACCATTGTCGAGTAAGTAA
Primer 2CIR055_R: CCGAGTAGGTCATTGTCT
Product Length189
PolymorphismP_ CIR0055
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567004
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567004AJ567004Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch01_At.01N/A102.1CIR055View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch01_At.01N/A56.06CIR055View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch01_At.01N/A46.78CIR055View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch10_At.10N/A30.17CIR055View
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch10_At.10N/A91.71CIR055View
6AD-genome wide Reference Map (2009)AD_ch01_At.01N/A120cir0055View
Sequence
>CIR0055 ID=CIR0055; Name=CIR0055; organism=Gossypium hirsutum; type=genetic_marker; length=189bp
AACCATTGTCGAGTAAGTAATATATATTTAGATGTTAAGGTACGTATTAT
GTACTCNACATGTGAATTGATTTCAAAGTGAATTATTAGTATCAAAGAAC
GATATATATATATATATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGA
TGAATTCNATATTTGAAGATAAGACAATGACCTACTCGG