CIR0051, CIR0051 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0051
AliasCIR51
CIR051
Genbank IDAJ567000
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567000
Source Typegenomic
Repeat Motif(T)12(N)3(GT)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR051_F: AGAGATTAGTTGCTGGAGA
Primer 2CIR051_R: TCACAGACGAAGGCA
Product Length231
PolymorphismP_ CIR0051
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567000
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567000AJ567000Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch11_At.11N/A182.3CIR051View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A172.2CIR051View
3AD-genome wide Reference Map (2009)AD_ch11_At.11N/A223cir0051View
4TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A43.97CIR051aView
5TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A44.6CIR051aView
6TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A53.64CIR051bView
7TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A53.5CIR051bView
8GB713 x Nem-X, F2 (2011)AD_ch21_Dt.11N/A86.7CIR051_225View
9TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A45.57CIR051aView
10TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A53.47CIR051bView
Sequence
>CIR0051 ID=CIR0051; Name=CIR0051; organism=Gossypium hirsutum; type=genetic_marker; length=231bp
AGAGATTAGTTGCTGGAGATGCATTTGTGTTTCTTAGGTACTTGGACATT
TGGATTTTTTTTTTTTNGTAGTGTGTGTGTGTATGCAGGTTCCAGGTGTG
GCATTTTGCATGACTTCTGGCTGTAATTGCACTTGCATGTCCTATTAGCA
GGTGCATAATGGCAGCAACTAAGCAGATATGGGGTATCGGCGGCTTGCTC
GTCAACCAGAGNACAATGCCTTCGTCTGTGA