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Marker Overview
| Name | CIR0043 |
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| Alias | CIR43
CIR043
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| Genbank ID | AJ566992 |
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| Type | SSR |
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| Species | Gossypium hirsutum |
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| Germplasm | Guazuncho-2 |
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| Source Sequence | AJ566992
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| Source Type | genomic |
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| Repeat Motif | (T)16(TG)9 |
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| PCR Condition | Annealing temperature: 55 |
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| Primer 1 | CIR043_F: CAGGGCTTCTTTATTATGT |
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| Primer 2 | CIR043_R: GGTGAAGTGGTTTCTCTC |
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| Product Length | 282 |
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| Polymorphism | P_ CIR0043 |
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| Publication | [view all] |
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| Comment | Primer data obtained in 2005 |
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Cross References
External references for this genetic_marker
Alignments
The following features are aligned
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
| # | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
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| 1 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch20_Dt.10 | N/A | 34.2 | CIR043 | View |
| 2 | Emian-22 x 3-79, BC1 (2011) | AD_ch20_Dt.10 | N/A | 86.26 | CIR043 | View |
| 3 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch20_Dt.10 | N/A | 184.4 | CIR043 | View |
| 4 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch20_Dt.10 | N/A | 110.22 | CIR043 | View |
| 5 | TM-1 x 3-79, RIL (2012) | AD_ch20_Dt.10 | N/A | 46.22 | CIR043 | View |
| 6 | DH962 X Ji Mian 5, F2 (2015) | AD_ch20_Dt.10 | N/A | 24.93 | CIR043 | View |
| 7 | TM-1 x 3-79, RIL (2014) | AD_ch20_Dt.10 | N/A | 46 | CIR043 | View |
| 8 | DH962 x Ji Mian 5, RIL (2015) | AD_ch20_Dt.10 | N/A | 74.1 | CIR043 | View |
| 9 | CCRI-35 x Yumian-1, RIL (2015) | AD_ch20_Dt.10 | N/A | 74 | CIR043 | View |
| 10 | Handan-208 x Pima-90, F2:3 (2007) | AD_ch20_Dt.10 | N/A | 158.1 | CIR043* | View |
| 11 | AD-genome wide Reference Map (2009) | AD_ch20_Dt.10 | N/A | 57 | cir0043 | View |
| 12 | CCRI-35 x Yumian-1, RIL (2017) | AD_ch20_Dt.10 | N/A | 83.4 | CIR043 | View |
| 13 | TM-1 x 3-79, RIL (2012.v3) | AD_ch20_Dt.10 | N/A | 46.03 | CIR043 | View |
Sequence
>CIR0043 ID=CIR0043; Name=CIR0043; organism=Gossypium hirsutum; type=genetic_marker; length=282bp
CAGGGCTTCTTTATTATGTTAAGTCACAGGGATATATCATAACTACCACT
ATAATAGCATTTATGCATTTTGTACTCTTCCATTTTATTCCTGTTTTTTT
TTTTTTTTTGTGTGTGTGTGTGTGTGATTTGGGCTGGCGGGGAATGCTCA
AGGTACATGCCACAAGGAAACAAAAGGGAGCCAGGGTACTATAAGAGAAA
CGATTTCATATGTTTCCAGGAAATGTTCAAGACGTTAAACTATTTCATTT
ACTGAAGAATGACAGAGAGAAACCACTTCACC
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