CIR0038, CIR0038 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0038
AliasCIR38
CIR038
Genbank IDAJ566987
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566987
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR038_F: AGAGCTTCAGGTAAGACAA
Primer 2CIR038_R: TGAACTAGCAAATCAGACA
Product Length113
PolymorphismP_ CIR0038
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566987
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
B_04chromosomeB_04:28771465..28771573 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566987AJ566987Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A76.9CIR038View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch17_Dt.03N/A44.3CIR038View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A30.15CIR038View
4Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A81.7CIR038View
5AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A113cir0038View
Sequence
>CIR0038 ID=CIR0038; Name=CIR0038; organism=Gossypium hirsutum; type=genetic_marker; length=113bp
AGAGCTTCAGGTAAGACAATTATTTTTCTCTAGTGTCTTAGCTCGTGTGT
GTGTGTGTTTTTTTTAATAAATACTGAGTAAGGGATTGCCAAGATGTCTG
ATTTGCTAGTTCA