CIR0037, CIR0037 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0037
AliasCIR37
CIR037
Genbank IDAJ566986
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566986
Source Typegenomic
Repeat Motif(AC)10
PCR ConditionAnnealing temperature: 46
Primer 1CIR037_F: GACAGTGAGAGCAGG
Primer 2CIR037_R: GATCATGCCTAAAGAA
Product Length194
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566986
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D08chromosomeD08:59916331..59916521 +
A08chromosomeA08:113147250..113147443 +
CM018222.1chromosomeCM018222.1:56376274..56376464 +
CM018209.1chromosomeCM018209.1:108555861..108556054 +
D5_08chromosomeD5_08:52683407..52683584 +
KI_08chromosomeKI_08:33375513..33375702 +
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:118170227..118170420 +
D10_08chromosomeD10_08:8457846..8458036 -
CM016621.1chromosomeCM016621.1:14292753..14292945 -
scaffold544.1supercontigscaffold544.1:921607..921797 +
scaffold149.1supercontigscaffold149.1:88020..88213 +
D08chromosomeD08:56463424..56463614 +
A08chromosomeA08:93957903..93958096 +
Ghir_D08chromosomeGhir_D08:59113405..59113595 +
Ghir_A08chromosomeGhir_A08:111820834..111821027 +
D08chromosomeD08:59821492..59821682 +
A08chromosomeA08:114755894..114756087 +
D08chromosomeD08:58992611..58992801 +
A08chromosomeA08:114636154..114636347 +
D08chromosomeD08:56270232..56270422 +
A08chromosomeA08:110533707..110533900 +
Dt08chromosomeDt08:58901160..58901352 +
scaffold13243supercontigscaffold13243:4836..5028 +
scaffold7414supercontigscaffold7414:130738..130931 -
Gbar_D08chromosomeGbar_D08:56412672..56412862 +
Gbar_A08chromosomeGbar_A08:109200078..109200271 +
D08chromosomeD08:58338325..58338515 +
A08chromosomeA08:110340265..110340458 +
CM017630.1chromosomeCM017630.1:57878949..57879139 +
CM017617.1chromosomeCM017617.1:108811797..108811988 +
CM017656.1chromosomeCM017656.1:60082090..60082280 +
CM017643.1chromosomeCM017643.1:118240835..118241028 +
CM017708.1chromosomeCM017708.1:56792274..56792464 +
CM017695.1chromosomeCM017695.1:109419080..109419277 +
D08chromosomeD08:59681636..59681826 +
A08chromosomeA08:116530574..116530767 +
Chr08chromosomeChr08:120781275..120781468 +
Chr08chromosomeChr08:121814348..121814541 +
Chr08chromosomeChr08:53568520..53568697 +
B_08chromosomeB_08:92899188..92899386 +
Chr04chromosomeChr04:55004854..55005042 +
chr04chromosomechr04:41305402..41305590 +
Chr_04chromosomeChr_04:37800787..37800977 +
Chr04chromosomeChr04:57339067..57339253 +
Chr04chromosomeChr04:36166885..36167073 +
Chr04chromosomeChr04:30395325..30395515 +
Chr04chromosomeChr04:36753895..36754081 +
E08chromosomeE08:109169666..109169853 -
F08chromosomeF08:94858562..94858751 +
Chr08chromosomeChr08:19665153..19665351 -
Chr04chromosomeCIR0037:1..225 .
Chr04:53238116..53238325 +
Chr4chromosomeCIR0037:1..225 .
Chr4:4162194..4162403 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566986AJ566986Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
17235 x TM-1, RIL (2007)AD_ch24_Dt.08N/A32.4CIR037View
2Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A41CIR037View
3AD-genome wide Reference Map (2009)AD_ch24_Dt.08N/A176cir0037View
Sequence
>CIR0037 ID=CIR0037; Name=CIR0037; organism=Gossypium hirsutum; type=genetic_marker; length=194bp
GACAGTGAGAGCAGGTCCCTACCCCTAGGCAAGGTGCTTTTAATGATGCA
CACAAGTTTTCTGCCCAGGCTTCATCTAGTTGTCTTGTACCTTTCTATCC
ATTAAGCAAAAAACCAAGGTTATAATGCATTTGGATTGTGTGTGTGTGTG
TGTGTGTTTTATTACCTTTTTTCATTTATTCTTTAGGCATGATC