CIR0013, CIR0013 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0013
AliasCIR13
CIR013
Genbank IDAJ566962
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566962
Source Typegenomic
Repeat Motif(AC)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR013_F: TCATTGCCATTTGACC
Primer 2CIR013_R: TCCACCTTCCACACC
Product Length208
PolymorphismP_ CIR0013
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566962
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:4669766..4669973 -
CM018225.1chromosomeCM018225.1:4321476..4321689 -
D5_11chromosomeD5_11:61612357..61612570 +
Dt_chr7chromosomeDt_chr7:2772889..2773096 -
D11chromosomeD11:4677859..4678066 -
Ghir_D11chromosomeGhir_D11:4583971..4584178 -
D11chromosomeD11:4524338..4524545 -
D11chromosomeD11:4630360..4630567 -
D11chromosomeD11:4530779..4530986 -
Dt11chromosomeDt11:5583644..5583857 -
scaffold11997supercontigscaffold11997:139451..139664 -
Gbar_D11chromosomeGbar_D11:4407287..4407500 -
D11chromosomeD11:4426384..4426597 -
CM017659.1chromosomeCM017659.1:4456520..4456725 -
CM017711.1chromosomeCM017711.1:4447449..4447658 -
D11chromosomeD11:4655440..4655647 -
Chr11chromosomeChr11:59097055..59097268 +
chr07chromosomechr07:3898093..3898714 -
Chr07chromosomeChr07:4410042..4410260 -
Chr07chromosomeChr07:3438340..3438559 -
Chr07chromosomeChr07:3316007..3316212 -
E11chromosomeE11:5216563..5216797 -
Chr07chromosomeCIR0013:1..264 .
Chr07:4108349..4108618 -
Chr7chromosomeCIR0013:1..264 .
Chr7:51312552..51312821 +
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566962AJ566962Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch21_Dt.11N/A55.26CIR013View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch21_Dt.11N/A253.9CIR013View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch21_Dt.11N/A152.24CIR013View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch21_Dt.11N/A143.28CIR013View
5TM-1 x 3-79, RIL (2012)AD_ch21_Dt.11N/A35.42CIR013View
6CCRI-36 x Hai-7124, F2 (2007)AD_ch21_Dt.11N/A179.5CIR013View
7DH962 x Jinmian-6, F2 (2009)AD_chUN/A99CIR013View
8DH962 X Ji Mian 5, F2 (2015)AD_ch21_Dt.11N/A38.32CIR013View
9TM-1 x 3-79, RIL (2014)AD_ch21_Dt.11N/A35.1CIR013View
10DH962 x Ji Mian 5, RIL (2015)AD_ch21_Dt.11N/A30.2CIR013View
11Handan-208 x Pima-90, F2:3 (2007)AD_ch21_Dt.11N/A184.6CIR013bView
12Handan-208 x Pima-90, F2:3 (2007)AD_ch21_Dt.11N/A203.8CIR013aView
13AD-genome wide Reference Map (2009)AD_ch21_Dt.11N/A101cir0013View
14GB713 x Nem-X, F2 (2011)AD_ch21_Dt.11N/A62.4CIR013_212View
15TM-1 x 3-79, RIL (2012.v3)AD_ch21_Dt.11N/A35.11CIR013View
Sequence
>CIR0013 ID=CIR0013; Name=CIR0013; organism=Gossypium hirsutum; type=genetic_marker; length=208bp
TCATTGCCATTTGACCATAACACACACACACACTACAATCCAAATCCTAA
AAACAAATTAGAAAGATGTTTTAAGTTTGGATAATCAAATAAACAAGTTT
AGATTGTTTTAAAAGTAGATATTAATTGATAAAATAACCTGAAATAAACC
ATCTTATGTTTTTAAATTTATTAAATTTCAGAAATGAATGCGGGGTGTGG
AAGGTGGA