CIR0003, CIR0003 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0003
AliasCIR3
CIR003
Genbank IDAJ566953
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ566953
Source Typegenomic
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR003_F: AAACCAACAGGAATATGAG
Primer 2CIR003_R: GGGGAAGATAACACGA
Product Length133
PolymorphismP_ CIR0003
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ566953
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ566953AJ566953Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch11_At.11N/A40.7CIR003View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch11_At.11N/A35.59CIR003View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch11_At.11N/A5.52CIR003View
4TM-1 x 3-79, RIL (2006)AD_ch11_At.11N/A40.3CIR003View
5CCRI-36 x Hai-7124, F2 (2007)AD_ch11_At.11N/A192.3CIR003View
6TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A137.54CIR003View
7NemX x SJ-2, RIL (2005)AD_ch11_At.11N/A45CIR003View
8TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A140.7CIR003View
9AD-genome wide Reference Map (2009)AD_ch11_At.11N/A128cir0003View
10TM-1 x 3-79, RIL (2011)AD_ch11_At.11N/A13.3CIR003_132/135View
11TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A140.67CIR003View
12PD 94042 x (AD)4-08, F2 (2016)AD_ch11_At.11N/A13.3CIR003View
Sequence
>CIR0003 ID=CIR0003; Name=CIR0003; organism=Gossypium hirsutum; type=genetic_marker; length=133bp
AAACCAACAGGAATATGAGGTGATTTTTCTTTTGTGTGTGTGTGTGCTTC
TATATAACGTAGATTAAACCAATTAATTTAATATTCTTCTGTTTCACAAT
TCTTTCTCTCTTCTCCATCGTGTTATCTTCCCC