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Marker Overview
Name | CIR0003 |
Alias | CIR3 CIR003
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Genbank ID | AJ566953 |
Type | SSR |
Species | Gossypium hirsutum |
Germplasm | Guazuncho-2 |
Source Sequence | AJ566953
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Source Type | genomic |
Repeat Motif | (TG)7 |
PCR Condition | Annealing temperature: 55 |
Primer 1 | CIR003_F: AAACCAACAGGAATATGAG |
Primer 2 | CIR003_R: GGGGAAGATAACACGA |
Product Length | 133 |
Polymorphism | P_ CIR0003 |
Publication | [view all] |
Comment | Primer data obtained in 2005 |
Cross References
External references for this genetic_marker
Relationships
The following sequence_feature feature(s) derives from this genetic_marker:
Map Positions
# | Map Name | Linkage Group | Bin | Position | Locus | MapViewer |
1 | Guazuncho-2 x VH8-4602, BC1 (2005) | AD_ch11_At.11 | N/A | 40.7 | CIR003 | View |
2 | Guazuncho-2 x VH8-4602, consensus (2009) | AD_ch11_At.11 | N/A | 35.59 | CIR003 | View |
3 | Guazuncho-2 x VH8-4602, RIL (2009) | AD_ch11_At.11 | N/A | 5.52 | CIR003 | View |
4 | TM-1 x 3-79, RIL (2006) | AD_ch11_At.11 | N/A | 40.3 | CIR003 | View |
5 | CCRI-36 x Hai-7124, F2 (2007) | AD_ch11_At.11 | N/A | 192.3 | CIR003 | View |
6 | TM-1 x 3-79, RIL (2012) | AD_ch11_At.11 | N/A | 137.54 | CIR003 | View |
7 | NemX x SJ-2, RIL (2005) | AD_ch11_At.11 | N/A | 45 | CIR003 | View |
8 | TM-1 x 3-79, RIL (2014) | AD_ch11_At.11 | N/A | 140.7 | CIR003 | View |
9 | AD-genome wide Reference Map (2009) | AD_ch11_At.11 | N/A | 128 | cir0003 | View |
10 | TM-1 x 3-79, RIL (2011) | AD_ch11_At.11 | N/A | 13.3 | CIR003_132/135 | View |
11 | TM-1 x 3-79, RIL (2012.v3) | AD_ch11_At.11 | N/A | 140.67 | CIR003 | View |
12 | PD 94042 x (AD)4-08, F2 (2016) | AD_ch11_At.11 | N/A | 13.3 | CIR003 | View |
Sequence
>CIR0003 ID=CIR0003; Name=CIR0003; organism=Gossypium hirsutum; type=genetic_marker; length=133bp AAACCAACAGGAATATGAGGTGATTTTTCTTTTGTGTGTGTGTGTGCTTC TATATAACGTAGATTAAACCAATTAATTTAATATTCTTCTGTTTCACAAT TCTTTCTCTCTTCTCCATCGTGTTATCTTCCCC
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