CGR6932, CGR6932 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6932
Genbank IDGQ394359
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1324
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6932_F: CACTAATGACGGACGGTTGA
Primer 2CGR6932_R: TTGATCATCCTCTTCCTTTGC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394359
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D06chromosomeD06:5693642..5693828 +
A06chromosomeA06:5878818..5879028 +
CM018220.1chromosomeCM018220.1:4979931..4980102 +
CM018207.1chromosomeCM018207.1:6159300..6159519 +
D5_06chromosomeD5_06:4748521..4748686 +
tig00015943_CRI-A2_v1.0.a1chromosometig00015943_CRI-A2_v1.0.a1:40199..40403 -
D10_06chromosomeD10_06:55077554..55077740 -
CM016619.1chromosomeCM016619.1:138839018..138839189 -
Dt_chr10chromosomeDt_chr10:25451708..25451888 +
At_chr10chromosomeAt_chr10:65994163..65994373 -
D06chromosomeD06:4720786..4720972 +
A06chromosomeA06:4772193..4772403 +
Ghir_D06chromosomeGhir_D06:5550446..5550632 +
Ghir_A06chromosomeGhir_A06:6194351..6194561 +
D06chromosomeD06:5316408..5316594 +
A06chromosomeA06:5924238..5924448 +
D06chromosomeD06:5521245..5521425 +
A06chromosomeA06:6140884..6141094 +
D06chromosomeD06:5046136..5046322 +
A06chromosomeA06:6066205..6066415 +
At06chromosomeAt06:5467918..5468095 +
At06chromosomeAt06:5466250..5466427 +
scaffold1022supercontigscaffold1022:136550..136727 +
scaffold14787supercontigscaffold14787:170193..170370 -
scaffold14787supercontigscaffold14787:165936..166107 -
Gbar_D06chromosomeGbar_D06:4995558..4995729 +
Gbar_A06chromosomeGbar_A06:5999228..5999447 +
D06chromosomeD06:4969473..4969644 +
A06chromosomeA06:6082274..6082493 +
CM017628.1chromosomeCM017628.1:5517170..5517341 +
CM017615.1chromosomeCM017615.1:6206471..6206675 +
CM017654.1chromosomeCM017654.1:5147912..5148116 +
CM017641.1chromosomeCM017641.1:6166933..6167149 +
CM017706.1chromosomeCM017706.1:5090437..5090614 +
CM017693.1chromosomeCM017693.1:6263208..6263424 +
D06chromosomeD06:5617670..5617856 +
A06chromosomeA06:6191937..6192147 +
Chr06chromosomeChr06:6072985..6073195 +
Chr06chromosomeChr06:6160624..6160828 +
Chr06chromosomeChr06:4631231..4631396 +
B_06chromosomeB_06:91328130..91328316 -
Chr10chromosomeChr10:5237243..5237435 +
chr10chromosomechr10:4563296..4563476 +
Chr_10chromosomeChr_10:4173269..4173467 +
Chr10chromosomeChr10:5418299..5418467 +
Chr10chromosomeChr10:3736486..3736660 +
Chr10chromosomeChr10:3305991..3306171 +
Chr10_6343490chromosomeChr10_6343490:121..295 +
E06chromosomeE06:110782281..110782460 -
Chr06chromosomeChr06:194679785..194679965 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1324MONCS1324Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch25_Dt.06N/A71.8CGR6932View
2W10 x TM-1, F2:3 (2015)AD_ch25_Dt.06N/A47CGR6932View
30-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A76.45CGR6932View
40-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A98.4CGR6932View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch06_At.06N/A111.2CGR6932View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch25_Dt.06N/A74CGR6932View
7Monsanto SSR Bin Map, (2009)AD_ch25_Dt.06N/A81CGR6932View
8(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch25_Dt.06N/A66.4MON_CGR6932View
Sequence
>CGR6932 ID=CGR6932; Name=CGR6932; organism=Gossypium hirsutum; type=genetic_marker; length=187bp
CACTAATGACGGACGGTTGATTCTTAGAGAAGAGAAGGTTAAACACCATG
AATATTGGGGGGCTCATCGATCCAATGGTCGTTTAACATTGCATCTTATT
CCCTTGGATAATGAAGATAATGATACAGATGTAGAAGAAGAAGAAGAAGA
AGAAGAAGAAGAAGAAGCAAAGGAAGAGGATGATCAA