CGR6856, CGR6856 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6856
Genbank IDGQ394292
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1257
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6856_F: AAACAATGAAGCCATGGACG
Primer 2CGR6856_R: AAGAAAGCTGCCCAACTGAC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Germplasm
Stock NameType
Deltapine 33 BTBD
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394292
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
CGR6856_FCGR6856_FGossypium hirsutumprimer
CGR6856_RCGR6856_RGossypium hirsutumprimer


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CGR6856bCGR6856bGossypium hirsutummarker_locus
CGR6856aCGR6856aGossypium hirsutummarker_locus
MON_CGR6856MON_CGR6856Gossypium hirsutummarker_locus
CGR6856CGR6856Gossypium hirsutummarker_locus
CGR6856CGR6856-71.714Gossypium hirsutummarker_locus


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1257MONCS1257Gossypium hirsutumsequence_feature


Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:61086464..61086661 +
A01chromosomeA01:100138262..100138461 +
CM018215.1chromosomeCM018215.1:59614178..59614385 +
CM018202.1chromosomeCM018202.1:109323283..109323484 +
KI_01chromosomeKI_01:35553975..35554156 +
Chr13chromosomeChr13:131360121..131360312 +
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:95519228..95519419 +
Chr2chromosomeChr2:2105476..2105699 +
D10_01chromosomeD10_01:3092606..3092801 -
CM016614.1chromosomeCM016614.1:133021700..133021885 +
scaffold42.1supercontigscaffold42.1:707369..707568 +
scaffold238.1supercontigscaffold238.1:406389..406586 +
D01chromosomeD01:58296676..58296873 +
A01chromosomeA01:96239651..96240032 +
Ghir_D01chromosomeGhir_D01:59963677..59963874 +
Ghir_A01chromosomeGhir_A01:113832547..113832746 +
D01chromosomeD01:61509266..61509463 +
A01chromosomeA01:114363473..114363672 +
D01chromosomeD01:61377025..61377222 +
A01chromosomeA01:112126289..112126486 +
A01chromosomeA01:108909992..108910191 +
At01chromosomeAt01:79602272..79602479 +
scaffold19879supercontigscaffold19879:156021..156228 +
scaffold196supercontigscaffold196:857714..857921 -
Gbar_D01chromosomeGbar_D01:59863317..59863522 +
Gbar_A01chromosomeGbar_A01:111800461..111800660 +
D01chromosomeD01:60517973..60518180 +
A01chromosomeA01:111785143..111785344 +
CM017623.1chromosomeCM017623.1:60744073..60744268 +
CM017610.1chromosomeCM017610.1:110366460..110366661 +
CM017649.1chromosomeCM017649.1:62257250..62257461 +
CM017636.1chromosomeCM017636.1:117853687..117853894 +
CM017701.1chromosomeCM017701.1:60208377..60208582 +
Sequence
>CGR6856 ID=CGR6856|Name=CGR6856|organism=Gossypium hirsutum|type=genetic_marker|length=200bp
AAACAATGAAGCCATGGACGTGGGGTTATGATTGTAGAAGGGAATTAGCT
GTATAATGGTAGGAGAGAAGGGTTAGGGTTTATGTTAGGCATGTGTCTCC
GTGTGTGTGTGTGTGTGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGGGACTTTGCTAGCTGTAACCTGCCTGTCAGTTGGGCAGCTTTCTT
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr01N/AAD_chr.0150CGR6856bView
2Monsanto SSR Bin Map, (2009)Monsanto SSR Bin Map, (2009).BIN-SSR_chr15N/AAD_chr.1530CGR6856aView
3(YM-1 x CCRI-35) x (YM-1 x 7235), 4WC (2012)YCY7-4WC_chr15-2N/AAD_chr.150MON_CGR6856View
4Yumian-1 x 7235, RIL (2015)Y7-RIL_chr15N/AAD_chr.15109.7CGR6856View
5CCRI-35 x Yumian-1, RIL (2015)CY-RIL_chr01N/AAD_chr.0183.4CGR6856View
6CCRI-35 x Yumian-1, RIL (2017)CY-RIL.17_chr01N/AAt.0171.71CGR6856View