CGR6829, CGR6829 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6829
Genbank IDGQ394270
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1235
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6829_F: GAGATCAACGGTGGACGTTT
Primer 2CGR6829_R: CCTCACTTCTGGTTCTTTCCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394270
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:27716222..27716398 +
CM018219.1chromosomeCM018219.1:26154002..26154178 +
D5_05chromosomeD5_05:24786170..24786346 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:30926685..30926861 +
D10_05chromosomeD10_05:35515676..35515852 -
Dt_chr9chromosomeDt_chr9:45609137..45609313 -
At_chr9chromosomeAt_chr9:33455540..33455710 -
D05chromosomeD05:26827413..26827589 +
Ghir_D05chromosomeGhir_D05:26996208..26996384 +
D05chromosomeD05:26243062..26243238 +
D05chromosomeD05:26827855..26828031 +
A05chromosomeA05:31408217..31408387 +
D05chromosomeD05:26695208..26695384 +
At05chromosomeAt05:26096435..26096641 +
scaffold9750supercontigscaffold9750:9069..9275 +
scaffold2591supercontigscaffold2591:90728..90904 -
scaffold2591supercontigscaffold2591:83278..83484 -
Gbar_D05chromosomeGbar_D05:26665824..26666000 +
D05chromosomeD05:26458170..26458346 +
CM017627.1chromosomeCM017627.1:26475020..26475196 +
CM017705.1chromosomeCM017705.1:26511169..26511345 +
D05chromosomeD05:27327866..27328042 +
Chr05chromosomeChr05:32013890..32014066 +
Chr05chromosomeChr05:31328098..31328274 +
Chr05chromosomeChr05:24906579..24906755 +
B_05chromosomeB_05:55350925..55351101 -
Chr09chromosomeChr09:25496752..25496928 +
chr09chromosomechr09:22520911..22521087 +
Chr_09chromosomeChr_09:21235710..21235886 +
Chr09chromosomeChr09:26272895..26273071 +
Chr09chromosomeChr09:20872072..20872248 +
Chr09chromosomeChr09:18400449..18400622 +
Chr09chromosomeChr09:21351047..21351229 +
E05chromosomeE05:33853041..33853214 +
F05chromosomeF05:27005851..27006027 +
Chr05chromosomeChr05:96060540..96060719 -
Chr1chromosomeCGR6829:4..447 .
Chr1:22908093..22908534 -
Chr09chromosomeCGR6829:4..452 .
Chr09:24720057..24720662 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1235MONCS1235Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A20.3CGR6829View
Sequence
>CGR6829 ID=CGR6829; Name=CGR6829; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
GAGATCAACGGTGGACGTTTTCAAGAATCCCAGTTCCNAGGAAACTCCAT
TTCAGGAGATCAACAACGTCAACAATTTTGATGAAGAGATCAAGGTAGAC
GAAAAGAAGAAGAAGAAGAAGAAGAAAGAACCAGAAGTGAGGACTTTTCA
TTCTATAGGGAAAGAACCAGAAGTGAGG