CIR0057, CIR0057 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0057
AliasCIR57
CIR057
Genbank IDAJ567006
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567006
Source Typegenomic
Repeat Motif(CA)7(A)12
PCR ConditionAnnealing temperature: 55
Primer 1CIR057_F: TTTCGTTCCATTGCTT
Primer 2CIR057_R: GTGTCTTTGATTCGGTTT
Product Length100
PolymorphismP_ CIR0057
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567006
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D13chromosomeD13:63904404..63904527 -
A13chromosomeA13:103679170..103679270 -
CM018227.1chromosomeCM018227.1:59601233..59601355 -
CM018214.1chromosomeCM018214.1:107402297..107402398 -
D5_13chromosomeD5_13:58022179..58022301 -
KI_13chromosomeKI_13:42274591..42274700 -
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:123098178..123098283 -
CM016626.1chromosomeCM016626.1:159574858..159574964 -
Dt_chr6chromosomeDt_chr6:24199789..24199912 +
At_chr4chromosomeAt_chr4:37014784..37014907 +
scaffold4893.1supercontigscaffold4893.1:4786..4886 -
scaffold132348supercontigscaffold132348:225..348 -
D13chromosomeD13:59728582..59728705 -
A13chromosomeA13:79116144..79116267 -
Ghir_D13chromosomeGhir_D13:62495913..62496036 -
Ghir_A13chromosomeGhir_A13:107414769..107414869 -
D13chromosomeD13:63646496..63646619 -
A13chromosomeA13:109517244..109517344 -
D13chromosomeD13:63090971..63091094 -
A13chromosomeA13:107740942..107741040 -
D13chromosomeD13:59341707..59341830 -
A13chromosomeA13:106462167..106462267 -
scaffold10937supercontigscaffold10937:43579..43680 +
Gbar_D13chromosomeGbar_D13:59481500..59481622 -
Gbar_A13chromosomeGbar_A13:108405774..108405873 -
D13chromosomeD13:60446722..60446845 -
A13chromosomeA13:112133675..112133776 -
CM017635.1chromosomeCM017635.1:61285751..61285873 -
CM017622.1chromosomeCM017622.1:109507656..109507757 -
CM017661.1chromosomeCM017661.1:63638817..63638939 -
CM017648.1chromosomeCM017648.1:114858946..114859047 -
CM017713.1chromosomeCM017713.1:59928435..59928557 -
CM017700.1chromosomeCM017700.1:109548962..109549063 -
D13chromosomeD13:64256552..64256675 -
A13chromosomeA13:110763119..110763219 -
Chr13chromosomeChr13:114846140..114846239 +
Chr13chromosomeChr13:121838490..121838595 -
Chr13chromosomeChr13:58000143..58000265 -
B_13chromosomeB_13:2023063..2023182 +
Chr13chromosomeChr13:42065241..42065472 -
Chr13chromosomeChr13:32465617..32465743 -
Chr13_501417chromosomeChr13_501417:10785..10900 -
E13chromosomeE13:114782532..114782673 -
F13chromosomeF13:95083203..95083310 -
Chr13chromosomeChr13:914087..914181 +
Chr13chromosomeCIR0057:1..167 .
Chr13:57536956..57537113 -
Chr13chromosomeCIR0057:1..167 .
Chr13:2202207..2202364 -
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567006AJ567006Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A16.4CIR057View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A8.8CIR057View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch13_At.13N/A7.87CIR057View
4AD-genome wide Reference Map (2009)AD_ch13_At.13N/A11cir0057View
Sequence
>CIR0057 ID=CIR0057; Name=CIR0057; organism=Gossypium hirsutum; type=genetic_marker; length=100bp
TTTCGTTCCATTGCTTCACACACACACACAAAAAAAAAAAAGCACAAAAA
CTTCCATAATCAGCTAACAAACTTTCACACATAAACCGAATCAAAGACAC