CGR6760, CGR6760 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6760
Genbank IDGQ394208
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1173
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6760_F: CGGGTGAAGGAAGAAACTAATC
Primer 2CGR6760_R: ACCGAGCAATAATCCAGCAG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394208
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:94410521..94410649 -
CM018206.1chromosomeCM018206.1:96815705..96815830 -
D5_04chromosomeD5_04:45195896..45196012 -
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:92293848..92293973 -
D10_04chromosomeD10_04:4906979..4907095 +
CM016617.1chromosomeCM016617.1:8062178..8062306 +
At_chr9chromosomeAt_chr9:59810601..59810729 -
A05chromosomeA05:86152136..86152264 -
Ghir_D04chromosomeGhir_D04:5502345..5502458 +
Ghir_A05chromosomeGhir_A05:103253217..103253345 -
A05chromosomeA05:104866887..104867015 -
A05chromosomeA05:103355602..103355730 -
A05chromosomeA05:101292675..101292803 -
Dt04chromosomeDt04:4990638..4990751 +
scaffold3498supercontigscaffold3498:35815..35940 +
scaffold19015supercontigscaffold19015:81403..81516 +
Gbar_D04chromosomeGbar_D04:5056862..5056975 +
Gbar_A05chromosomeGbar_A05:96833314..96833439 -
A05chromosomeA05:101787113..101787238 -
CM017614.1chromosomeCM017614.1:99090289..99090414 -
CM017640.1chromosomeCM017640.1:107494677..107494793 -
CM017692.1chromosomeCM017692.1:99707737..99707862 -
A05chromosomeA05:105049304..105049432 -
Chr04chromosomeChr04:6449014..6449139 +
Chr04chromosomeChr04:6281136..6281261 +
Chr04chromosomeChr04:45627247..45627369 -
Chr12chromosomeChr12:5355273..5355389 +
Chr_12chromosomeChr_12:3705371..3705487 +
Chr12chromosomeChr12:5072165..5072281 +
Chr12chromosomeChr12:5211880..5211996 +
Chr12chromosomeChr12:3497733..3497849 +
Chr12chromosomeChr12:4911182..4911298 +
E04chromosomeE04:7862844..7862975 +
F04chromosomeF04:5262101..5262223 +
Chr04chromosomeChr04:7574101..7574220 +
Chr12chromosomeCGR6760:4..459 .
Chr12:5025511..5025958 +
Chr12chromosomeCGR6760:4..459 .
Chr12:21247111..21247558 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1173MONCS1173Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch05_At.05N/A58.6MON_CGR6760View
2DH962 X Ji Mian 5, F2 (2015)AD_ch05_At.05N/A16.41MON_CGR6760View
3DH962 x Ji Mian 5, RIL (2015)AD_ch05_At.05N/A6.2MON_CGR6760View
Sequence
>CGR6760 ID=CGR6760; Name=CGR6760; organism=Gossypium hirsutum; type=genetic_marker; length=131bp
CGGGTGAAGGAAGAAACTAATCTTGTAATAAGCCATAATCACGAACTTGA
AGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGGGTTTGATGATGCATGGA
GTTGGCGTGTGCTGCTGGATTATTGCTCGGT