CGR6708, CGR6708 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6708
Genbank IDGQ394162
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1127
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6708_F: GCTCTACAAGTCTACAAGGAAGGG
Primer 2CGR6708_R: CGGACCCAGAATCCAATG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394162
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A05chromosomeA05:3702955..3703055 -
CM018219.1chromosomeCM018219.1:3048491..3048610 -
CM018206.1chromosomeCM018206.1:3669276..3669382 -
D5_05chromosomeD5_05:2944195..2944314 -
KI_05chromosomeKI_05:2684139..2684242 -
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:3610455..3610551 -
D10_05chromosomeD10_05:57568493..57568597 +
CM016626.1chromosomeCM016626.1:5169852..5169946 -
At_chr9chromosomeAt_chr9:50626825..50626925 +
A05chromosomeA05:3211311..3211411 -
Ghir_A05chromosomeGhir_A05:3711823..3711923 -
A05chromosomeA05:3584125..3584225 -
A05chromosomeA05:3685824..3685924 -
A05chromosomeA05:4090674..4090774 -
scaffold10000supercontigscaffold10000:332851..332974 +
scaffold3667supercontigscaffold3667:216074..216180 -
Gbar_D05chromosomeGbar_D05:3197380..3197497 -
Gbar_A05chromosomeGbar_A05:3358684..3358790 -
D05chromosomeD05:3348666..3348785 -
A05chromosomeA05:3840071..3840177 -
CM017627.1chromosomeCM017627.1:3173345..3173472 -
CM017614.1chromosomeCM017614.1:3672394..3672496 -
CM017653.1chromosomeCM017653.1:3339175..3339342 -
CM017640.1chromosomeCM017640.1:3750893..3750997 -
CM017705.1chromosomeCM017705.1:3164554..3164673 -
CM017692.1chromosomeCM017692.1:3638807..3638905 -
A05chromosomeA05:3795483..3795583 -
Chr05chromosomeChr05:3921829..3921931 -
Chr05chromosomeChr05:3467157..3467255 -
Chr05chromosomeChr05:2949562..2949681 -
B_05chromosomeB_05:82613630..82613729 +
Chr09chromosomeChr09:3061187..3061290 -
Chr_09chromosomeChr_09:3226118..3226225 -
Chr09chromosomeChr09:3141397..3141502 -
Chr09chromosomeChr09:2921124..2921227 -
Chr09chromosomeChr09:2337617..2337712 -
Chr09chromosomeChr09:2874604..2874713 -
F05chromosomeF05:3104616..3104724 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1127MONCS1127Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch19_Dt.05N/A33.7CGR6708bView
2Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A181CGR6708bView
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch05_At.05N/A9.3CGR6708aView
4Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A221CGR6708aView
5(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A93.2MON_CGR6708View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch05_At.05N/A23.6CGR6708View
7CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A201.7CGR6708View
8TM-1 x Hai-7124, BC1 (2012)AD_ch05_At.05N/A188.7cgr6708-110View
Sequence
>CGR6708 ID=CGR6708; Name=CGR6708; organism=Gossypium hirsutum; type=genetic_marker; length=101bp
GCTCTACAAGTCTACAAGGAAGGGTAGTCTACAAGACAGGGTCAGTATAG
GGTAACAGAGAGAGAGAGAGAGAGAGAAGTGTGCATTGGATTCTGGGTCC
G