CGR6697, CGR6697 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6697
Genbank IDGQ394151
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1116
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6697_F: ACCCTAAACCACCCGATACC
Primer 2CGR6697_R: AGATGCTCCCTCCCTCTCTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394151
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D5_11chromosomeD5_11:61270202..61270373 +
At_chr1chromosomeAt_chr1:85236667..85236857 +
Ghir_D11chromosomeGhir_D11:4936684..4936837 -
scaffold7496supercontigscaffold7496:65533..65707 -
B_11chromosomeB_11:5114447..5114604 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1116MONCS1116Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch11_At.11N/A46CGR6697aView
2Monsanto SSR Bin Map, (2009)AD_ch11_At.11N/A21CGR6697aView
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch17_Dt.03N/A83.8CGR6697bView
4Monsanto SSR Bin Map, (2009)AD_ch21_Dt.11N/A21CGR6697bView
5Yumian-1 x T586, RIL (2015)AD_ch21_Dt.11N/A4.8CGR6697View
6CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch21_Dt.11N/A110.5CGR6697View
Sequence
>CGR6697 ID=CGR6697; Name=CGR6697; organism=Gossypium hirsutum; type=genetic_marker; length=196bp
ACCCTAAACCACCCGATACCCAAGNTTTTTCAACTTTTATTTATTTATTG
ATAAAAAAGACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAAATTTTAGAAGCAAAGAGTGAAAAAGAAAAAA
GTTTACCAGTGGCGGCACCGTCAGAGGAGAGAGGGAGGGAGCATCT