CGR6695, CGR6695 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6695
Genbank IDGQ394149
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1114
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6695_F: CTAATTTAGTTTGGGTGGGT
Primer 2CGR6695_R: TCTCGTGTAGACCATTCGACTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Germplasm
Stock NameType
Deltapine 33 BTBD
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394149
Relationships

This genetic_marker is adjacent to the following primer feature(s):

Feature NameUnique NameSpeciesType
CGR6695_FCGR6695_FGossypium hirsutumprimer
CGR6695_RCGR6695_RGossypium hirsutumprimer


The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1114MONCS1114Gossypium hirsutumsequence_feature


The following marker_locus feature(s) are an instance of this genetic_marker:

Feature NameUnique NameSpeciesType
CGR6695CGR6695Gossypium hirsutummarker_locus


Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A02chromosomeA02:62384636..62384833 +
CM018217.1chromosomeCM018217.1:14967548..14967741 +
D5_02chromosomeD5_02:14174611..14174795 +
Chr3chromosomeChr3:15134284..15134467 -
D10_02chromosomeD10_02:15063038..15063223 +
Dt_chr3chromosomeDt_chr3:32051467..32051664 -
scaffold3920_D03supercontigscaffold3920_D03:4472605..4472802 -
Ghir_D03chromosomeGhir_D03:20386316..20386513 -
D03chromosomeD03:21350064..21350261 -
D03chromosomeD03:21498067..21498264 -
D03chromosomeD03:20307105..20307302 -
scaffold15supercontigscaffold15:118100..118293 +
Gbar_D03chromosomeGbar_D03:14995088..14995281 +
D03chromosomeD03:21191624..21191817 -
CM017625.1chromosomeCM017625.1:14921442..14921643 +
CM017651.1chromosomeCM017651.1:15408878..15409069 +
CM017703.1chromosomeCM017703.1:15172213..15172408 +
Chr02chromosomeCGR6695:1..298 .
Chr02:5188697..5188976 -
Chr3chromosomeCGR6695:1..298 .
Chr3:15134190..15134469 -
Sequence
>CGR6695 ID=CGR6695|Name=CGR6695|organism=Gossypium hirsutum|type=genetic_marker|length=200bp
CTAATTTAGTTTGGGTGGGTTTTAATTTTTTTTAGTTTTTTATTCTACAA
CAAAATCTATTTTAAACTAAATTTTTTCAACAATTGATATCAGAGCTAAT
TTGTGTAATATATATAATATAAGCCGAACATTGAATTTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCAAATTTTGAAAAAGTCGAATGGTCTACACGAGA
Map Positions
#Map NameLinkage GroupBinChromosomePositionLocus
1GX1135 x GX100-2, F2 (2013)GG-F2_chr02-2N/AAD_chr.0229.1CGR6695
2GX1135 x GX100-2, RIL (2015)GG-RIL.15_chr02-1N/AAD_chr.024.7CGR6695
3GX1135 x GX100-2, RIL (2016)GG-RIL.16_chr02-1N/AAD_chr.024.6CGR6695
4GX1135 x VGX100-2, RIL (2016)GVG-RIL_chr02-1N/AAD_chr.029.6CGR6695