CGR6547, CGR6547 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6547
Genbank IDGQ394110
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1075
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6547_F: GGCAGAAGAGACAAGTTGGG
Primer 2CGR6547_R: CATTCCTCTCATCGCCATCT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394110
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:54942843..54942985 +
A07chromosomeA07:90734601..90734727 +
CM018221.1chromosomeCM018221.1:52923127..52923257 +
CM018208.1chromosomeCM018208.1:90698183..90698309 +
D5_07chromosomeD5_07:48422598..48422730 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:94150384..94150510 +
D10_07chromosomeD10_07:3184064..3184192 -
At_chr9chromosomeAt_chr9:48679173..48679315 -
At_chr7chromosomeAt_chr7:30856010..30856136 -
D07chromosomeD07:52087140..52087298 +
A07chromosomeA07:75178006..75178132 +
Ghir_D07chromosomeGhir_D07:56163473..56163613 +
Ghir_A07chromosomeGhir_A07:94595003..94595129 +
D07chromosomeD07:55364081..55364223 +
A07chromosomeA07:93546646..93546772 +
D07chromosomeD07:55701174..55701316 +
A07chromosomeA07:93568499..93568625 +
D07chromosomeD07:52038945..52039079 +
A07chromosomeA07:90088817..90088943 +
scaffold11395supercontigscaffold11395:27647..27779 -
scaffold11395supercontigscaffold11395:16952..17084 -
scaffold11395supercontigscaffold11395:13439..13569 -
Gbar_D07chromosomeGbar_D07:53302937..53303065 +
Gbar_A07chromosomeGbar_A07:89817758..89817884 +
D07chromosomeD07:53975251..53975381 +
A07chromosomeA07:91997222..91997348 +
CM017629.1chromosomeCM017629.1:53873603..53873737 +
CM017616.1chromosomeCM017616.1:93665055..93665173 +
CM017642.1chromosomeCM017642.1:96595401..96595525 +
CM017707.1chromosomeCM017707.1:53997084..53997222 +
CM017694.1chromosomeCM017694.1:92008916..92009042 +
D07chromosomeD07:56277790..56277932 +
A07chromosomeA07:95710206..95710332 +
Chr07chromosomeChr07:97485658..97485782 +
Chr07chromosomeChr07:98799514..98799640 +
Chr07chromosomeChr07:3050215..3050347 -
B_07chromosomeB_07:79647475..79647591 +
Chr_01chromosomeChr_01:37747317..37747445 +
Chr01chromosomeChr01:31052071..31052193 +
Chr01chromosomeChr01:38481116..38481240 +
E07chromosomeE07:4783747..4783870 -
F07chromosomeF07:79545252..79545378 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1075MONCS1075Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch16_Dt.07N/A0CGR6547View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch16_Dt.07N/A192.1CGR6547View
3Monsanto SSR Bin Map, (2009)AD_ch16_Dt.07N/A81CGR6547View
4(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch16_Dt.07N/A127.6MON_CGR6547View
5CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A144.58CGR6547View
Sequence
>CGR6547 ID=CGR6547; Name=CGR6547; organism=Gossypium hirsutum; type=genetic_marker; length=127bp
GGCAGAAGAGACAAGTTGGGGGGTTTTGGGTTAGAAGTAGAATAAATTTT
CCTCTTATCAGTTCGTTGAAGAAGAAAGAGAGAGAGAGAGAGAGAGGTGA
AAATGACAGATGGCGATGAGAGGAATG