CGR6530, CGR6530 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6530
Genbank IDGQ394097
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1062
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6530_F: ATGAATGGACATTGGTGGGA
Primer 2CGR6530_R: CTCATCAAGCCTTCTATATCCA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394097
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:10587406..10587603 +
A05chromosomeA05:11517054..11517251 +
CM018219.1chromosomeCM018219.1:9909200..9909400 +
CM018206.1chromosomeCM018206.1:11237846..11238044 +
D5_05chromosomeD5_05:9407259..9407453 +
KI_05chromosomeKI_05:8576549..8576751 +
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:11291471..11291668 +
D10_05chromosomeD10_05:51079505..51079705 -
CM016626.1chromosomeCM016626.1:16094825..16095012 +
Dt_chr9chromosomeDt_chr9:60982907..60983104 +
At_chr9chromosomeAt_chr9:45831541..45831739 -
D05chromosomeD05:9855221..9855418 +
A05chromosomeA05:10334321..10334519 +
Ghir_D05chromosomeGhir_D05:10325025..10325222 +
Ghir_A05chromosomeGhir_A05:11408991..11409189 +
D05chromosomeD05:10060954..10061151 +
A05chromosomeA05:11053535..11053733 +
D05chromosomeD05:10153030..10153227 +
A05chromosomeA05:11439455..11439653 +
D05chromosomeD05:10036861..10037058 +
A05chromosomeA05:11647612..11647807 +
scaffold6528supercontigscaffold6528:108541..108739 +
scaffold2152supercontigscaffold2152:116713..116913 -
Gbar_D05chromosomeGbar_D05:10258664..10258864 +
Gbar_A05chromosomeGbar_A05:10821706..10821904 +
D05chromosomeD05:10300268..10300468 +
A05chromosomeA05:11437227..11437425 +
CM017627.1chromosomeCM017627.1:10192287..10192484 +
CM017614.1chromosomeCM017614.1:11300525..11300720 +
CM017653.1chromosomeCM017653.1:10528569..10528766 +
CM017640.1chromosomeCM017640.1:11520191..11520386 +
CM017705.1chromosomeCM017705.1:10147510..10147710 +
CM017692.1chromosomeCM017692.1:11164693..11164894 +
D05chromosomeD05:10387085..10387282 +
A05chromosomeA05:11657727..11657925 +
Chr05chromosomeChr05:12033214..12033408 +
Chr05chromosomeChr05:11130341..11130538 +
Chr05chromosomeChr05:9450106..9450300 +
B_05chromosomeB_05:74857323..74857518 -
Chr09chromosomeChr09:9822152..9822337 +
chr09chromosomechr09:8936619..8936810 +
Chr_09chromosomeChr_09:8763457..8763649 +
Chr09chromosomeChr09:10106720..10106908 +
Chr09chromosomeChr09:8830209..8830412 +
Chr09chromosomeChr09:7433888..7434079 +
Chr09chromosomeChr09:8617840..8618036 +
E05chromosomeE05:12121992..12122183 +
F05chromosomeF05:9776104..9776304 +
Chr13chromosomeChr13:186219098..186219294 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1062MONCS1062Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch05_At.05N/A115.1CGR6530View
2Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A201CGR6530View
3TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A136.9cgr6530-250View
Sequence
>CGR6530 ID=CGR6530; Name=CGR6530; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
ATGAATGGACATTGGTGGGATACAGTTAACCATTTCAACAATAAAAAAGA
TGAGTCGAAGCTTGACTTGTCTTTGAAGCTCTAAGTAGCTACTCTACTTT
CATTCTTCTTCTTCTTCTTCTTCTTCCTAGATTATTTTTTCTTTGATTTT
TAGCTGGATTTTTTGTAAATGCATTTTGGATATAGAAGGCTTGATGAG