CGR6529, CGR6529 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6529
Genbank IDGQ394096
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1061
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6529_F: TTCAAAGCTGTTCCCTGGTT
Primer 2CGR6529_R: TCAAATAAGGTAACCATGTCCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394096
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D05chromosomeD05:52152203..52152456 +
A01chromosomeA01:6808655..6808900 -
CM018215.1chromosomeCM018215.1:5150194..5150447 -
CM018202.1chromosomeCM018202.1:5873664..5873909 -
D5_01chromosomeD5_01:4891952..4892205 -
KI_01chromosomeKI_01:3972653..3972899 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:6550294..6550536 -
D10_01chromosomeD10_01:55689249..55689495 +
CM016614.1chromosomeCM016614.1:7459322..7459564 -
scaffold4451.1supercontigscaffold4451.1:58535..58788 +
At_chr2chromosomeAt_chr2:6208308..6208553 +
scaffold3715_D01supercontigscaffold3715_D01:66712..66965 +
A01chromosomeA01:5552442..5552687 -
Ghir_D01chromosomeGhir_D01:5443155..5443408 -
Ghir_A01chromosomeGhir_A01:6043459..6043704 -
D01chromosomeD01:5153200..5153453 -
A01chromosomeA01:5733761..5734006 -
D01chromosomeD01:5181287..5181540 -
A01chromosomeA01:6018746..6018991 -
D01chromosomeD01:5294571..5294824 -
A01chromosomeA01:5966100..5966345 -
At01chromosomeAt01:5181080..5181324 -
At01chromosomeAt01:5190093..5190338 -
scaffold6074supercontigscaffold6074:2895..3140 +
scaffold6940supercontigscaffold6940:59845..60089 -
scaffold6940supercontigscaffold6940:68858..69103 -
Gbar_D01chromosomeGbar_D01:5635798..5636051 -
Gbar_A01chromosomeGbar_A01:5823646..5823891 -
D01chromosomeD01:5420772..5421025 -
A01chromosomeA01:5735333..5735578 -
CM017623.1chromosomeCM017623.1:5271840..5272093 -
CM017610.1chromosomeCM017610.1:6552822..6553067 -
CM017649.1chromosomeCM017649.1:5724273..5724523 -
CM017636.1chromosomeCM017636.1:5921207..5921449 -
CM017701.1chromosomeCM017701.1:5387225..5387478 -
CM017688.1chromosomeCM017688.1:5998875..5999120 -
D01chromosomeD01:5570981..5571234 -
A01chromosomeA01:6009191..6009436 -
Chr01chromosomeChr01:6347891..6348133 -
Chr01chromosomeChr01:4883746..4883999 -
B_01chromosomeB_01:6323944..6324188 -
Chr02chromosomeChr02:5290716..5290960 -
chr02chromosomechr02:4201640..4202067 -
Chr_02chromosomeChr_02:4091216..4091463 -
Chr02chromosomeChr02:5488379..5488621 -
Chr02chromosomeChr02:4913643..4914211 -
Chr02_3388984chromosomeChr02_3388984:10141..10385 +
Chr02chromosomeChr02:4800805..4801049 -
F01chromosomeF01:5108131..5108373 -
Chr01chromosomeChr01:192518116..192518354 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1061MONCS1061Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch01_At.01N/A16MON_CGR6529View
2DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A45.48MON_CGR6529View
3DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A45.48MON_CGR6529View
4DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A72.3MON_CGR6529View
5DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A72.3MON_CGR6529View
Sequence
>CGR6529 ID=CGR6529; Name=CGR6529; organism=Gossypium hirsutum; type=genetic_marker; length=254bp
TTCAAAGCTGTTCCCTGGTTTTTTTAAGCTAAAAACAAACAATAAACCCT
TCACTTTTCCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTGAAACTACAA
TGGAAATATAACATATTATATATAATGAATGAAAGGATATAAATCTCTTG
GATTAAAAATTATGGGGTTTCTTTTGGGGGGGTTGAATTCAAAGACATAT
TCACAAACACATGCAAATGTTGTAATATTTAGGGGACATGGTTACCTTAT
TTGA